Protein Description

Gene Symbol RAPGEF1
Entrez ID 2889
Uniprot ID Q13905
Description Rap guanine nucleotide exchange factor 1
Chromosomal Location chr9: 131,576,770-131,740,074
Ontology GO ID GO Term Definition Evidence

BP

GO:0000186

activation of MAPKK activity

The initiation of the activity of the inactive enzyme MAP kinase kinase (MAPKK).

TAS

BP

GO:0001568

blood vessel development

The process whose specific outcome is the progression of a blood vessel over time, from its formation to the mature structure. The blood vessel is the vasculature carrying blood.

IEA

BP

GO:0007165

signal transduction

The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.

NAS

BP

GO:0007169

transmembrane receptor protein tyrosine kinase signaling pathway

A series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell where the receptor possesses tyrosine kinase activity, and ending with regulation of a downstream cellular process, e.g. transcription.

TAS

BP

GO:0010976

positive regulation of neuron projection development

Any process that increases the rate, frequency or extent of neuron projection development. Neuron projection development is the process whose specific outcome is the progression of a neuron projection over time, from its formation to the mature structure. A neuron projection is any process extending from a neural cell, such as axons or dendrites (collectively called neurites).

IMP

BP

GO:0016337

single organismal cell-cell adhesion

The attachment of one cell to another cell via adhesion molecules, where both cells are part of the same organism.

IEA

BP

GO:0032486

Rap protein signal transduction

A series of molecular signals within the cell that are mediated by a member of the Rap family of proteins switching to a GTP-bound active state.

IMP

BP

GO:0038180

nerve growth factor signaling pathway

A series of molecular signals initiated by the binding of nerve growth factor (NGF) to a receptor on the surface of the target cell, and ending with regulation of a downstream cellular process, e.g. transcription.

IDA

BP

GO:0043547

positive regulation of GTPase activity

Any process that activates or increases the activity of a GTPase.

IDA|IMP

BP

GO:0046580

negative regulation of Ras protein signal transduction

Any process that stops, prevents, or reduces the frequency, rate or extent of Ras protein signal transduction.

IEA

BP

GO:0048008

platelet-derived growth factor receptor signaling pathway

The series of molecular signals generated as a consequence of a platelet-derived growth factor receptor binding to one of its physiological ligands.

IEA

BP

GO:0051898

negative regulation of protein kinase B signaling

Any process that stops, prevents, or reduces the frequency, rate or extent of protein kinase B signaling, a series of reactions mediated by the intracellular serine/threonine kinase protein kinase B.

IEA

BP

GO:0061028

establishment of endothelial barrier

The establishment of a barrier between endothelial cell layers, such as those in the brain, lung or intestine, to exert specific and selective control over the passage of water and solutes, thus allowing formation and maintenance of compartments that differ in fluid and solute composition.

IMP

BP

GO:0070373

negative regulation of ERK1 and ERK2 cascade

Any process that stops, prevents, or reduces the frequency, rate or extent of signal transduction mediated by the ERK1 and ERK2 cascade.

IEA

BP

GO:0071320

cellular response to cAMP

Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) stimulus.

IDA

BP

GO:0090090

negative regulation of canonical Wnt signaling pathway

Any process that decreases the rate, frequency, or extent of the Wnt signaling pathway through beta-catenin, the series of molecular signals initiated by binding of a Wnt protein to a frizzled family receptor on the surface of the target cell, followed by propagation of the signal via beta-catenin, and ending with a change in transcription of target genes.

IEA

BP

GO:1901888

regulation of cell junction assembly

Any process that modulates the frequency, rate or extent of cell junction assembly.

IMP

BP

GO:1990090

cellular response to nerve growth factor stimulus

A process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nerve growth factor stimulus.

IDA

BP

GO:2000178

negative regulation of neural precursor cell proliferation

Any process that stops, prevents, or reduces the frequency, rate or extent of neural precursor cell proliferation.

IEA

CC

GO:0005768

endosome

A vacuole to which materials ingested by endocytosis are delivered.

TAS

CC

GO:0005769

early endosome

A membrane-bounded organelle that receives incoming material from primary endocytic vesicles that have been generated by clathrin-dependent and clathrin-independent endocytosis; vesicles fuse with the early endosome to deliver cargo for sorting into recycling or degradation pathways.

IDA

CC

GO:0005829

cytosol

The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.

TAS

MF

GO:0005515

protein binding

Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

IPI

MF

GO:0017034

Rap guanyl-nucleotide exchange factor activity

Stimulates the exchange of guanyl nucleotides associated with a GTPase of the Rap family. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase.

IDA|IMP

MF

GO:0017124

SH3 domain binding

Interacting selectively and non-covalently with a SH3 domain (Src homology 3) of a protein, small protein modules containing approximately 50 amino acid residues found in a great variety of intracellular or membrane-associated proteins.

IEA

Domain ID Description

IPR000651

Ras-like guanine nucleotide exchange factor, N-terminal

IPR001895

Ras guanine-nucleotide exchange factors catalytic domain

IPR019804

Ras guanine-nucleotide exchange factor, conserved site

IPR023578

Ras guanine nucleotide exchange factor domain

Pathway ID Pathway Term Pathway Source

hsa04015

Rap1 signaling pathway

KEGG

hsa04510

Focal adhesion

KEGG

hsa04722

Neurotrophin signaling pathway

KEGG

hsa04910

Insulin signaling pathway

KEGG

hsa05211

Renal cell carcinoma

KEGG

WP23

B Cell Receptor Signaling Pathway

WikiPathways

WP3915

Angiopoietin Like Protein 8 Regulatory Pathway

WikiPathways

WP313

Signaling of Hepatocyte Growth Factor Receptor

WikiPathways

WP306

Focal Adhesion

WikiPathways

WP585

Interferon type I signaling pathways

WikiPathways

WP481

Insulin Signaling

WikiPathways

WP185

Integrin-mediated Cell Adhesion

WikiPathways

WP286

IL-3 Signaling Pathway

WikiPathways

WP3888

VEGFA-VEGFR2 Signaling Pathway

WikiPathways

h_integrinPathway

Integrin Signaling Pathway

BioCarta

h_metPathway

Signaling of Hepatocyte Growth Factor Receptor

BioCarta

No diseases found.

Tissue Cell Type

skeletal muscle

myocytes

No databases found.

Pubmed ID Author Year Title

22951915

Haozi et al.

2012

Altered gene expression profile in cumulus cells of mature MII oocytes from patients with polycystic ovary syndrome

Gene Symbol Entrez ID Uniprot ID Score

YES1

7525

P07947

0.00

HRAS

3265

P01112

0.52

RRAS2

22800

P62070

0.52

RHOQ

23433

P17081

0.52

FYN

2534

P06241

0.63

NCK1

4690

P16333

0.63

PIK3R1

5295

P27986

0.63

RPS15

6209

P62841

0.63

SLC20A1

6574

Q8WUM9

0.63

NEDD9

4739

Q14511

0.84

ABL1

25

P00519

0.87

CRK

1398

P46108

0.97

GRB2

2885

P62993

0.97

CBLB

868

Q13191

0.00

GRAP2

9402

O75791

0.00

CBLC

23624

Q9ULV8

0.00

RAP1B

5908

P61224

0.55

CTLA4

1493

P16410

0.63

MOV10

4343

Q9HCE1

0.63

ATXN1

6310

P54253

0.63

SRC

6714

P12931

0.63

NXF1

10482

Q9UBU9

0.63

MBIP

51562

Q9NS73

0.63

SPATS2L

26010

Q9NUQ6

0.72

CBL

867

P22681

0.73

SHC1

6464

P29353

0.73

BCAR1

9564

P56945

0.79

EGFR

1956

P00533

0.88

CRKL

1399

P46109

0.90

HCK

3055

P08631

0.96