Gene Symbol | THOC3 |
Entrez ID | 84321 |
Uniprot ID | Q96J01 |
Description | THO complex 3 |
Chromosomal Location | chr5: 175,917,873-176,034,680 |
Ontology | GO ID | GO Term | Definition | Evidence |
---|---|---|---|---|
BP |
GO:0006369 |
termination of RNA polymerase II transcription |
The process in which the synthesis of an RNA molecule by RNA polymerase II using a DNA template is completed. |
TAS |
BP |
GO:0006405 |
RNA export from nucleus |
The directed movement of RNA from the nucleus to the cytoplasm. |
TAS |
BP |
GO:0006406 |
mRNA export from nucleus |
The directed movement of mRNA from the nucleus to the cytoplasm. |
IDA|TAS |
BP |
GO:0008380 |
RNA splicing |
The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA. |
IEA |
BP |
GO:0031124 |
mRNA 3'-end processing |
Any process involved in forming the mature 3' end of an mRNA molecule. |
TAS |
BP |
GO:0046784 |
viral mRNA export from host cell nucleus |
The directed movement of intronless viral mRNA from the host nucleus to the cytoplasm for translation. |
IDA |
CC |
GO:0000346 |
transcription export complex |
The transcription export (TREX) complex couples transcription elongation by RNA polymerase II to mRNA export. The complex associates with the polymerase and travels with it along the length of the transcribed gene. TREX is composed of the THO transcription elongation complex as well as other proteins that couple THO to mRNA export proteins. The TREX complex is known to be found in a wide range of eukaryotes, including S. cerevisiae and metazoans. |
IDA |
CC |
GO:0000445 |
THO complex part of transcription export complex |
The THO complex when it is part of the TREX (TRanscription EXport) complex that is involved in coupling transcription to export of mRNAs to the cytoplasm. In S. cerevisiae, it is composed of four subunits: Hpr1, Tho2, Thp1, and Mft1, while the human complex is composed of 7 subunits. |
IDA |
CC |
GO:0000784 |
nuclear chromosome, telomeric region |
The terminal region of a linear nuclear chromosome that includes the telomeric DNA repeats and associated proteins. |
IDA |
CC |
GO:0005654 |
nucleoplasm |
That part of the nuclear content other than the chromosomes or the nucleolus. |
TAS |
CC |
GO:0016607 |
nuclear speck |
A discrete extra-nucleolar subnuclear domain, 20-50 in number, in which splicing factors are seen to be localized by immunofluorescence microscopy. |
IEA |
MF |
GO:0003723 |
RNA binding |
Interacting selectively and non-covalently with an RNA molecule or a portion thereof. |
IEA |
Domain ID | Description |
---|---|
IPR001680 |
WD40 repeat |
IPR013979 |
Translation initiation factor, beta propellor-like domain |
IPR015943 |
WD40/YVTN repeat-like-containing domain |
IPR017986 |
WD40-repeat-containing domain |
IPR020472 |
G-protein beta WD-40 repeat |
IPR024977 |
Anaphase-promoting complex subunit 4, WD40 domain |
Pathway ID | Pathway Term | Pathway Source |
---|---|---|
hsa03013 |
RNA transport |
KEGG |
hsa03040 |
Spliceosome |
KEGG |
Tissue | Cell Type |
---|---|
adrenal gland |
glandular cells |
appendix |
glandular cells |
bone marrow |
hematopoietic cells |
bronchus |
respiratory epithelial cells |
colon |
glandular cells |
duodenum |
glandular cells |
endometrium |
glandular cells |
epididymis |
glandular cells |
esophagus |
squamous epithelial cells |
gallbladder |
glandular cells |
kidney |
cells in tubules |
nasopharynx |
respiratory epithelial cells |
oral mucosa |
squamous epithelial cells |
parathyroid gland |
glandular cells |
placenta |
decidual cells |
placenta |
trophoblastic cells |
prostate |
glandular cells |
rectum |
glandular cells |
small intestine |
glandular cells |
stomach |
glandular cells |
thyroid gland |
glandular cells |
tonsil |
squamous epithelial cells |
urinary bladder |
urothelial cells |
vagina |
squamous epithelial cells |
Pubmed ID | Author | Year | Title |
---|---|---|---|
22617121 |
Ouandaogo et al. |
2012 |
Differences in transcriptomic profiles of human cumulus cells isolated from oocytes at GV, MI and MII stages after in vivo andin vitro oocyte maturation |
Gene Symbol | Entrez ID | Uniprot ID | Score |
---|---|---|---|
PAK2 |
5062 |
Q13177 |
0.49 |
TTC1 |
7265 |
Q99614 |
0.49 |
UTRN |
7402 |
P46939 |
0.49 |
VIM |
7431 |
P08670 |
0.49 |
ZKSCAN5 |
23660 |
Q9Y2L8 |
0.49 |
ZC3H15 |
55854 |
Q8WU90 |
0.49 |
ZCRB1 |
85437 |
Q8TBF4 |
0.49 |
NUDCD2 |
134492 |
Q8WVJ2 |
0.49 |
THOC6 |
79228 |
Q86W42 |
0.59 |
THOC7 |
80145 |
Q6I9Y2 |
0.83 |
ADRBK1 |
156 |
P25098 |
0.63 |
BRCA1 |
672 |
P38398 |
0.63 |
HDGF |
3068 |
P51858 |
0.63 |
SUMO2 |
6613 |
P61956 |
0.63 |
TK1 |
7083 |
P04183 |
0.63 |
KIAA0101 |
9768 |
Q15004 |
0.63 |
MLKL |
197259 |
Q8NB16 |
0.63 |
BCLAF1 |
9774 |
Q9NYF8 |
0.72 |
NCBP1 |
4686 |
Q09161 |
0.73 |
YOD1 |
55432 |
Q5VVQ6 |
0.76 |
DDX39B |
7919 |
Q13838 |
0.79 |
ALYREF |
10189 |
Q86V81 |
0.79 |
THOC5 |
8563 |
Q13769 |
0.83 |
THOC1 |
9984 |
Q96FV9 |
0.83 |
THOC2 |
57187 |
Q8NI27 |
0.83 |