Gene Symbol | POLR1E |
Entrez ID | 64425 |
Uniprot ID | Q9GZS1 |
Description | polymerase (RNA) I polypeptide E |
Chromosomal Location | chr9: 37,485,935-37,503,697 |
Ontology | GO ID | GO Term | Definition | Evidence |
---|---|---|---|---|
BP |
GO:0001189 |
RNA polymerase I transcriptional preinitiation complex assembly at the promoter for the nuclear large rRNA transcript |
The aggregation, arrangement and bonding together of proteins on CORE promoter element DNA of the nuclear large ribosomal RNA (rRNA) transcript to form a transcriptional preinitiation complex (PIC), the formation of which is a prerequisite for transcription from the large rRNA promoter, resulting in the subsequent synthesis of the large rRNA transcript. |
IEA |
BP |
GO:0006361 |
transcription initiation from RNA polymerase I promoter |
Any process involved in the assembly of the RNA polymerase I preinitiation complex (PIC) at an RNA polymerase I promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. Promoter clearance, or release, is the transition between the initiation and elongation phases of transcription. |
TAS |
BP |
GO:0006362 |
transcription elongation from RNA polymerase I promoter |
The extension of an RNA molecule after transcription initiation and promoter clearance at an RNA polymerase I specific promoter by the addition of ribonucleotides catalyzed by RNA polymerase I. |
TAS |
BP |
GO:0006363 |
termination of RNA polymerase I transcription |
The process in which the synthesis of an RNA molecule by RNA polymerase I using a DNA template is completed. RNAP I termination requires binding of a terminator protein so specific sequences downstream of the transcription unit. |
TAS |
BP |
GO:0009303 |
rRNA transcription |
The synthesis of ribosomal RNA (rRNA), any RNA that forms part of the ribosomal structure, from a DNA template. |
ISS |
BP |
GO:0045815 |
positive regulation of gene expression, epigenetic |
Any epigenetic process that activates or increases the rate of gene expression. |
TAS |
CC |
GO:0005634 |
nucleus |
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. |
IDA |
CC |
GO:0005654 |
nucleoplasm |
That part of the nuclear content other than the chromosomes or the nucleolus. |
TAS |
CC |
GO:0005730 |
nucleolus |
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome. |
IDA|ISS |
CC |
GO:0005736 |
DNA-directed RNA polymerase I complex |
RNA polymerase I, one of three nuclear DNA-directed RNA polymerases found in all eukaryotes, is a multisubunit complex; typically it produces rRNAs. Two large subunits comprise the most conserved portion including the catalytic site and share similarity with other eukaryotic and bacterial multisubunit RNA polymerases. The remainder of the complex is composed of smaller subunits (generally ten or more), some of which are also found in RNA polymerase III and others of which are also found in RNA polymerases II and III. Although the core is competent to mediate ribonucleic acid synthesis, it requires additional factors to select the appropriate template. |
IBA |
MF |
GO:0001054 |
RNA polymerase I activity |
Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template that contains an RNA polymerase I specific promoter to direct initiation and catalyzes DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'. |
IBA |
MF |
GO:0001179 |
RNA polymerase I transcription factor binding |
Interacting selectively and non-covalently with an RNA polymerase I transcription factor, any protein required to initiate or regulate transcription by RNA polymerase I. |
IEA |
MF |
GO:0003677 |
DNA binding |
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
IEA |
Domain ID | Description |
---|---|
IPR009668 |
RNA polymerase I associated factor, A49-like |
Pathway ID | Pathway Term | Pathway Source |
---|---|---|
hsa00230 |
Purine metabolism |
KEGG |
hsa00240 |
Pyrimidine metabolism |
KEGG |
hsa01100 |
Metabolic pathways |
KEGG |
hsa03020 |
RNA polymerase |
KEGG |
WP405 |
Eukaryotic Transcription Initiation |
WikiPathways |
Tissue | Cell Type |
---|---|
cerebellum |
Purkinje cells |
esophagus |
squamous epithelial cells |
oral mucosa |
squamous epithelial cells |
ovary |
follicle cells |
placenta |
decidual cells |
rectum |
glandular cells |
skin |
epidermal cells |
testis |
cells in seminiferous ducts |
Pubmed ID | Author | Year | Title |
---|---|---|---|
23824412 |
Piltonen et al. |
2013 |
Mesenchymal Stem/Progenitors and Other Endometrial Cell Types From Women With Polycystic Ovary Syndrome (PCOS) Display Inflammatory and Oncogenic Potential |
Gene Symbol | Entrez ID | Uniprot ID | Score |
---|---|---|---|
MYO1A |
4640 |
Q9UBC5 |
0.52 |
SSRP1 |
6749 |
Q08945 |
0.52 |
TAF1C |
9013 |
Q15572 |
0.52 |
POLR2H |
5437 |
P52434 |
0.59 |
POLR2L |
5441 |
P62875 |
0.59 |
POLR1D |
51082 |
Q9Y2S0 |
0.59 |
HNRNPAB |
3182 |
Q99729 |
0.63 |
EIF3H |
8667 |
O15372 |
0.63 |
RB1CC1 |
9821 |
Q8TDY2 |
0.63 |
IGF2BP3 |
10643 |
O00425 |
0.63 |
CDC37 |
11140 |
Q16543 |
0.63 |
SUN2 |
25777 |
Q9UH99 |
0.63 |
MRM3 |
55178 |
Q9HC36 |
0.63 |
RADIL |
55698 |
Q96JH8 |
0.63 |
HDX |
139324 |
Q7Z353 |
0.63 |
HNRNPA3 |
220988 |
P51991 |
0.63 |
HNRNPUL1 |
11100 |
Q9BUJ2 |
0.76 |
DDX20 |
11218 |
Q9UHI6 |
0.76 |
QPCTL |
54814 |
Q9NXS2 |
0.76 |
POLR2E |
5434 |
P19388 |
0.82 |
DDX6 |
1656 |
P26196 |
0.83 |
POLR1B |
84172 |
Q9H9Y6 |
0.85 |
CD3EAP |
10849 |
O15446 |
0.89 |
UBTF |
7343 |
P17480 |
0.93 |
POLR1A |
25885 |
O95602 |
0.95 |
POLR1C |
9533 |
O15160 |
0.96 |
DDX18 |
8886 |
Q9NVP1 |
0.49 |
CPSF3 |
51692 |
Q9UKF6 |
0.49 |
GRWD1 |
83743 |
Q9BQ67 |
0.49 |
ESR2 |
2100 |
Q92731 |
0.55 |
NOP58 |
51602 |
Q9Y2X3 |
0.56 |
CEBPA |
1050 |
P49715 |
0.63 |
RNF2 |
6045 |
Q99496 |
0.63 |
SKAP1 |
8631 |
Q86WV1 |
0.63 |
PAXIP1 |
22976 |
Q6ZW49 |
0.63 |
GPN3 |
51184 |
Q9UHW5 |
0.63 |
SMARCAD1 |
56916 |
Q9H4L7 |
0.63 |
MYO1C |
4641 |
O00159 |
0.65 |
ARRB1 |
408 |
P49407 |
0.72 |
IKBKG |
8517 |
Q9Y6K9 |
0.72 |
WIZ |
58525 |
O95785 |
0.72 |
SUPT16H |
11198 |
Q9Y5B9 |
0.73 |
TAF1D |
79101 |
Q9H5J8 |
0.76 |
POLR2F |
5435 |
P61218 |
0.79 |
RRN3 |
54700 |
Q9NYV6 |
0.79 |
NFKBIB |
4793 |
Q15653 |
0.86 |