Protein Description

Gene Symbol POLR1E
Entrez ID 64425
Uniprot ID Q9GZS1
Description polymerase (RNA) I polypeptide E
Chromosomal Location chr9: 37,485,935-37,503,697
Ontology GO ID GO Term Definition Evidence

BP

GO:0001189

RNA polymerase I transcriptional preinitiation complex assembly at the promoter for the nuclear large rRNA transcript

The aggregation, arrangement and bonding together of proteins on CORE promoter element DNA of the nuclear large ribosomal RNA (rRNA) transcript to form a transcriptional preinitiation complex (PIC), the formation of which is a prerequisite for transcription from the large rRNA promoter, resulting in the subsequent synthesis of the large rRNA transcript.

IEA

BP

GO:0006361

transcription initiation from RNA polymerase I promoter

Any process involved in the assembly of the RNA polymerase I preinitiation complex (PIC) at an RNA polymerase I promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. Promoter clearance, or release, is the transition between the initiation and elongation phases of transcription.

TAS

BP

GO:0006362

transcription elongation from RNA polymerase I promoter

The extension of an RNA molecule after transcription initiation and promoter clearance at an RNA polymerase I specific promoter by the addition of ribonucleotides catalyzed by RNA polymerase I.

TAS

BP

GO:0006363

termination of RNA polymerase I transcription

The process in which the synthesis of an RNA molecule by RNA polymerase I using a DNA template is completed. RNAP I termination requires binding of a terminator protein so specific sequences downstream of the transcription unit.

TAS

BP

GO:0009303

rRNA transcription

The synthesis of ribosomal RNA (rRNA), any RNA that forms part of the ribosomal structure, from a DNA template.

ISS

BP

GO:0045815

positive regulation of gene expression, epigenetic

Any epigenetic process that activates or increases the rate of gene expression.

TAS

CC

GO:0005634

nucleus

A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

IDA

CC

GO:0005654

nucleoplasm

That part of the nuclear content other than the chromosomes or the nucleolus.

TAS

CC

GO:0005730

nucleolus

A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.

IDA|ISS

CC

GO:0005736

DNA-directed RNA polymerase I complex

RNA polymerase I, one of three nuclear DNA-directed RNA polymerases found in all eukaryotes, is a multisubunit complex; typically it produces rRNAs. Two large subunits comprise the most conserved portion including the catalytic site and share similarity with other eukaryotic and bacterial multisubunit RNA polymerases. The remainder of the complex is composed of smaller subunits (generally ten or more), some of which are also found in RNA polymerase III and others of which are also found in RNA polymerases II and III. Although the core is competent to mediate ribonucleic acid synthesis, it requires additional factors to select the appropriate template.

IBA

MF

GO:0001054

RNA polymerase I activity

Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template that contains an RNA polymerase I specific promoter to direct initiation and catalyzes DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.

IBA

MF

GO:0001179

RNA polymerase I transcription factor binding

Interacting selectively and non-covalently with an RNA polymerase I transcription factor, any protein required to initiate or regulate transcription by RNA polymerase I.

IEA

MF

GO:0003677

DNA binding

Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).

IEA

Domain ID Description

IPR009668

RNA polymerase I associated factor, A49-like

Pathway ID Pathway Term Pathway Source

hsa00230

Purine metabolism

KEGG

hsa00240

Pyrimidine metabolism

KEGG

hsa01100

Metabolic pathways

KEGG

hsa03020

RNA polymerase

KEGG

WP405

Eukaryotic Transcription Initiation

WikiPathways

No diseases found.

Tissue Cell Type

cerebellum

Purkinje cells

esophagus

squamous epithelial cells

oral mucosa

squamous epithelial cells

ovary

follicle cells

placenta

decidual cells

rectum

glandular cells

skin

epidermal cells

testis

cells in seminiferous ducts

No databases found.

Pubmed ID Author Year Title

23824412

Piltonen et al.

2013

Mesenchymal Stem/Progenitors and Other Endometrial Cell Types From Women With Polycystic Ovary Syndrome (PCOS) Display Inflammatory and Oncogenic Potential

Gene Symbol Entrez ID Uniprot ID Score

MYO1A

4640

Q9UBC5

0.52

SSRP1

6749

Q08945

0.52

TAF1C

9013

Q15572

0.52

POLR2H

5437

P52434

0.59

POLR2L

5441

P62875

0.59

POLR1D

51082

Q9Y2S0

0.59

HNRNPAB

3182

Q99729

0.63

EIF3H

8667

O15372

0.63

RB1CC1

9821

Q8TDY2

0.63

IGF2BP3

10643

O00425

0.63

CDC37

11140

Q16543

0.63

SUN2

25777

Q9UH99

0.63

MRM3

55178

Q9HC36

0.63

RADIL

55698

Q96JH8

0.63

HDX

139324

Q7Z353

0.63

HNRNPA3

220988

P51991

0.63

HNRNPUL1

11100

Q9BUJ2

0.76

DDX20

11218

Q9UHI6

0.76

QPCTL

54814

Q9NXS2

0.76

POLR2E

5434

P19388

0.82

DDX6

1656

P26196

0.83

POLR1B

84172

Q9H9Y6

0.85

CD3EAP

10849

O15446

0.89

UBTF

7343

P17480

0.93

POLR1A

25885

O95602

0.95

POLR1C

9533

O15160

0.96

DDX18

8886

Q9NVP1

0.49

CPSF3

51692

Q9UKF6

0.49

GRWD1

83743

Q9BQ67

0.49

ESR2

2100

Q92731

0.55

NOP58

51602

Q9Y2X3

0.56

CEBPA

1050

P49715

0.63

RNF2

6045

Q99496

0.63

SKAP1

8631

Q86WV1

0.63

PAXIP1

22976

Q6ZW49

0.63

GPN3

51184

Q9UHW5

0.63

SMARCAD1

56916

Q9H4L7

0.63

MYO1C

4641

O00159

0.65

ARRB1

408

P49407

0.72

IKBKG

8517

Q9Y6K9

0.72

WIZ

58525

O95785

0.72

SUPT16H

11198

Q9Y5B9

0.73

TAF1D

79101

Q9H5J8

0.76

POLR2F

5435

P61218

0.79

RRN3

54700

Q9NYV6

0.79

NFKBIB

4793

Q15653

0.86