Gene Symbol | SEMA6A |
Entrez ID | 57556 |
Uniprot ID | Q9H2E6 |
Description | sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A |
Chromosomal Location | chr5: 116,443,616-116,574,934 |
Ontology | GO ID | GO Term | Definition | Evidence |
---|---|---|---|---|
BP |
GO:0001755 |
neural crest cell migration |
The characteristic movement of cells from the dorsal ridge of the neural tube to a variety of locations in a vertebrate embryo. |
IBA |
BP |
GO:0006915 |
apoptotic process |
A programmed cell death process which begins when a cell receives an internal (e.g. DNA damage) or external signal (e.g. an extracellular death ligand), and proceeds through a series of biochemical events (signaling pathway phase) which trigger an execution phase. The execution phase is the last step of an apoptotic process, and is typically characterized by rounding-up of the cell, retraction of pseudopodes, reduction of cellular volume (pyknosis), chromatin condensation, nuclear fragmentation (karyorrhexis), plasma membrane blebbing and fragmentation of the cell into apoptotic bodies. When the execution phase is completed, the cell has died. |
NAS |
BP |
GO:0007010 |
cytoskeleton organization |
A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures. |
NAS |
BP |
GO:0007166 |
cell surface receptor signaling pathway |
A series of molecular signals initiated by activation of a receptor on the surface of a cell. The pathway begins with binding of an extracellular ligand to a cell surface receptor, or for receptors that signal in the absence of a ligand, by ligand-withdrawal or the activity of a constitutively active receptor. The pathway ends with regulation of a downstream cellular process, e.g. transcription. |
NAS |
BP |
GO:0007399 |
nervous system development |
The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state. |
NAS |
BP |
GO:0007411 |
axon guidance |
The chemotaxis process that directs the migration of an axon growth cone to a specific target site in response to a combination of attractive and repulsive cues. |
NAS |
BP |
GO:0009887 |
animal organ morphogenesis |
Morphogenesis of an animal organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process in which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions. |
NAS |
BP |
GO:0048843 |
negative regulation of axon extension involved in axon guidance |
Any process that stops, prevents, or reduces the frequency, rate or extent of axon extension involved in axon guidance. |
IBA |
BP |
GO:0050919 |
negative chemotaxis |
The directed movement of a motile cell or organism towards a lower concentration of a chemical. |
IEA |
BP |
GO:0071526 |
semaphorin-plexin signaling pathway |
A series of molecular signals generated as a consequence of a semaphorin receptor (composed of a plexin and a neurophilin) binding to a semaphorin ligand. |
IBA |
BP |
GO:2001224 |
positive regulation of neuron migration |
Any process that activates or increases the frequency, rate or extent of neuron migration. |
IBA |
CC |
GO:0005887 |
integral component of plasma membrane |
The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
IBA |
CC |
GO:0016021 |
integral component of membrane |
The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
NAS |
CC |
GO:0030424 |
axon |
The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter. |
NAS |
MF |
GO:0005515 |
protein binding |
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
IPI |
MF |
GO:0030215 |
semaphorin receptor binding |
Interacting selectively and non-covalently with semaphorin receptors. |
IBA |
MF |
GO:0045499 |
chemorepellent activity |
Providing the environmental signal that initiates the directed movement of a motile cell or organism towards a lower concentration of that signal. |
IBA |
Domain ID | Description |
---|---|
IPR001627 |
Sema domain |
IPR002165 |
Plexin repeat |
IPR015943 |
WD40/YVTN repeat-like-containing domain |
IPR016201 |
PSI domain |
IPR027231 |
Semaphorin |
Pathway ID | Pathway Term | Pathway Source |
---|---|---|
hsa04360 |
Axon guidance |
KEGG |
WP2431 |
Spinal Cord Injury |
WikiPathways |
Tissue | Cell Type |
---|---|
adrenal gland |
glandular cells |
appendix |
glandular cells |
appendix |
lymphoid tissue |
bone marrow |
hematopoietic cells |
breast |
glandular cells |
bronchus |
respiratory epithelial cells |
caudate |
neuronal cells |
cerebellum |
Purkinje cells |
cerebral cortex |
neuropil |
cervix, uterine |
squamous epithelial cells |
colon |
glandular cells |
duodenum |
glandular cells |
endometrium |
glandular cells |
esophagus |
squamous epithelial cells |
fallopian tube |
glandular cells |
gallbladder |
glandular cells |
heart muscle |
myocytes |
kidney |
cells in tubules |
lung |
macrophages |
lymph node |
germinal center cells |
lymph node |
non-germinal center cells |
nasopharynx |
respiratory epithelial cells |
oral mucosa |
squamous epithelial cells |
ovary |
follicle cells |
pancreas |
exocrine glandular cells |
pancreas |
islets of Langerhans |
parathyroid gland |
glandular cells |
placenta |
decidual cells |
placenta |
trophoblastic cells |
prostate |
glandular cells |
rectum |
glandular cells |
salivary gland |
glandular cells |
seminal vesicle |
glandular cells |
skin |
fibroblasts |
skin |
epidermal cells |
small intestine |
glandular cells |
spleen |
cells in white pulp |
stomach |
glandular cells |
testis |
Leydig cells |
thyroid gland |
glandular cells |
tonsil |
germinal center cells |
tonsil |
non-germinal center cells |
tonsil |
squamous epithelial cells |
urinary bladder |
urothelial cells |
vagina |
squamous epithelial cells |
Pubmed ID | Author | Year | Title |
---|---|---|---|
22617121 |
Ouandaogo et al. |
2012 |
Differences in transcriptomic profiles of human cumulus cells isolated from oocytes at GV, MI and MII stages after in vivo andin vitro oocyte maturation |
Gene Symbol | Entrez ID | Uniprot ID | Score |
---|---|---|---|
SMAD2 |
4087 |
Q15796 |
0.49 |
SORBS1 |
10580 |
Q9BX66 |
0.63 |
TMEM216 |
51259 |
Q9P0N5 |
0.49 |
TMEM17 |
200728 |
Q86X19 |
0.49 |
UBE2I |
7329 |
P63279 |
0.52 |
SUMO1 |
7341 |
P63165 |
0.52 |
PTCH1 |
5727 |
Q13635 |
0.63 |
NCK2 |
8440 |
O43639 |
0.63 |
SORBS2 |
8470 |
O94875 |
0.63 |
ITM2B |
9445 |
Q9Y287 |
0.63 |
ITSN2 |
50618 |
Q9NZM3 |
0.63 |
SH3RF1 |
57630 |
Q7Z6J0 |
0.73 |
EVL |
51466 |
Q9UI08 |
0.74 |