Gene Symbol | ARID1B |
Entrez ID | 57492 |
Uniprot ID | Q8NFD5 |
Description | AT-rich interaction domain 1B |
Chromosomal Location | chr6: 156,777,374-157,210,779 |
Ontology | GO ID | GO Term | Definition | Evidence |
---|---|---|---|---|
BP |
GO:0006351 |
transcription, DNA-templated |
The cellular synthesis of RNA on a template of DNA. |
IEA |
BP |
GO:0007399 |
nervous system development |
The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state. |
IEA |
BP |
GO:0016569 |
chromatin modification |
The alteration of DNA or protein in chromatin by the covalent addition or removal of chemical groups. |
IEA |
BP |
GO:0048096 |
chromatin-mediated maintenance of transcription |
Maintenance of transcription by remodelling of chromatin into an 'open configuration'. Once established, this regulation is mitotically stable and is maintained over many cell divisions. It is also heritable. |
NAS |
CC |
GO:0005654 |
nucleoplasm |
That part of the nuclear content other than the chromosomes or the nucleolus. |
IDA |
CC |
GO:0005737 |
cytoplasm |
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. |
IDA |
CC |
GO:0016514 |
SWI/SNF complex |
A SWI/SNF-type complex that contains nine or more proteins, including both conserved (core) and nonconserved components; the Swi2/Snf2 ATPase is one of the core components. |
IDA |
CC |
GO:0071565 |
nBAF complex |
A SWI/SNF-type complex that is found in post-mitotic neurons, and in human contains actin and proteins encoded by the ARID1A/BAF250A or ARID1B/BAF250B, SMARCD1/BAF60A, SMARCD3/BAF60C, SMARCA2/BRM/BAF190B, SMARCA4/BRG1/BAF190A, SMARCB1/BAF47, SMARCC1/BAF155, SMARCE1/BAF57, SMARCC2/BAF170, DPF1/BAF45B, DPF3/BAF45C, ACTL6B/BAF53B genes. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth. |
IEA |
MF |
GO:0003677 |
DNA binding |
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
IEA |
MF |
GO:0003713 |
transcription coactivator activity |
Interacting selectively and non-covalently with a activating transcription factor and also with the basal transcription machinery in order to increase the frequency, rate or extent of transcription. Cofactors generally do not bind the template nucleic acid, but rather mediate protein-protein interactions between activating transcription factors and the basal transcription machinery. |
NAS |
Domain ID | Description |
---|---|
IPR001606 |
ARID DNA-binding domain |
IPR011989 |
Armadillo-like helical |
IPR021906 |
SWI/SNF-like complex subunit BAF250/Osa |
IPR033388 |
SWI/SNF-like complex subunit BAF250, C-terminal |
UMLS CUI | UMLS Term |
---|---|
C0027819 |
Neuroblastoma |
C2239176 |
Liver Carcinoma |
Tissue | Cell Type |
---|---|
bone marrow |
hematopoietic cells |
cerebellum |
cells in molecular layer |
cerebellum |
Purkinje cells |
cerebral cortex |
neuronal cells |
epididymis |
glandular cells |
esophagus |
squamous epithelial cells |
gallbladder |
glandular cells |
oral mucosa |
squamous epithelial cells |
parathyroid gland |
glandular cells |
seminal vesicle |
glandular cells |
spleen |
cells in white pulp |
thyroid gland |
glandular cells |
tonsil |
squamous epithelial cells |
urinary bladder |
urothelial cells |
vagina |
squamous epithelial cells |
Database Name |
---|
DisGeNET |
Pubmed ID | Author | Year | Title |
---|---|---|---|
22617121 |
Ouandaogo et al. |
2012 |
Differences in transcriptomic profiles of human cumulus cells isolated from oocytes at GV, MI and MII stages after in vivo andin vitro oocyte maturation |
Gene Symbol | Entrez ID | Uniprot ID | Score |
---|---|---|---|
BCL7A |
605 |
Q4VC05 |
0.49 |
BCL7C |
9274 |
Q8WUZ0 |
0.49 |
BCL7B |
9275 |
Q9BQE9 |
0.49 |
HIST2H2BE |
8349 |
Q16778 |
0.56 |
ENO1 |
2023 |
P06733 |
0.63 |
SMAD9 |
4093 |
O15198 |
0.63 |
PYGM |
5837 |
P11217 |
0.63 |
SMARCA1 |
6594 |
P28370 |
0.63 |
RBX1 |
9978 |
P62877 |
0.63 |
PRMT5 |
10419 |
O14744 |
0.63 |
TCEB1 |
6921 |
Q15369 |
0.68 |
CUL2 |
8453 |
Q13617 |
0.68 |
SMARCC2 |
6601 |
Q8TAQ2 |
0.74 |
SMARCD1 |
6602 |
Q96GM5 |
0.74 |
ARID1A |
8289 |
O14497 |
0.74 |
ARID1B |
57492 |
Q8NFD5 |
0.75 |
SMARCC1 |
6599 |
Q92922 |
0.89 |
SMARCA2 |
6595 |
P51531 |
0.96 |
SMARCA4 |
6597 |
P51532 |
0.97 |
ACTL6A |
86 |
O96019 |
0.49 |
STIL |
6491 |
Q15468 |
0.49 |
SMARCD2 |
6603 |
Q92925 |
0.49 |
SMARCD3 |
6604 |
Q6STE5 |
0.49 |
YAP1 |
10413 |
P46937 |
0.49 |
B9D2 |
80776 |
Q9BPU9 |
0.49 |
SPICE1 |
152185 |
Q8N0Z3 |
0.49 |
EPAS1 |
2034 |
Q99814 |
0.63 |
SMAD2 |
4087 |
Q15796 |
0.63 |
SUMO3 |
6612 |
P55854 |
0.63 |
SUMO2 |
6613 |
P61956 |
0.63 |
KDM5B |
10765 |
Q9UGL1 |
0.63 |
QPRT |
23475 |
Q15274 |
0.63 |
GABARAPL1 |
23710 |
Q9H0R8 |
0.63 |
CAND1 |
55832 |
Q86VP6 |
0.63 |
RELB |
5971 |
Q01201 |
0.72 |
DPF2 |
5977 |
Q92785 |
0.73 |
SS18 |
6760 |
Q15532 |
0.73 |
DPF3 |
8110 |
Q92784 |
0.73 |
SMARCE1 |
6605 |
Q969G3 |
0.74 |
SMARCB1 |
6598 |
Q12824 |
0.83 |