Protein Description

Gene Symbol ARID1B
Entrez ID 57492
Uniprot ID Q8NFD5
Description AT-rich interaction domain 1B
Chromosomal Location chr6: 156,777,374-157,210,779
Ontology GO ID GO Term Definition Evidence

BP

GO:0006351

transcription, DNA-templated

The cellular synthesis of RNA on a template of DNA.

IEA

BP

GO:0007399

nervous system development

The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state.

IEA

BP

GO:0016569

chromatin modification

The alteration of DNA or protein in chromatin by the covalent addition or removal of chemical groups.

IEA

BP

GO:0048096

chromatin-mediated maintenance of transcription

Maintenance of transcription by remodelling of chromatin into an 'open configuration'. Once established, this regulation is mitotically stable and is maintained over many cell divisions. It is also heritable.

NAS

CC

GO:0005654

nucleoplasm

That part of the nuclear content other than the chromosomes or the nucleolus.

IDA

CC

GO:0005737

cytoplasm

All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

IDA

CC

GO:0016514

SWI/SNF complex

A SWI/SNF-type complex that contains nine or more proteins, including both conserved (core) and nonconserved components; the Swi2/Snf2 ATPase is one of the core components.

IDA

CC

GO:0071565

nBAF complex

A SWI/SNF-type complex that is found in post-mitotic neurons, and in human contains actin and proteins encoded by the ARID1A/BAF250A or ARID1B/BAF250B, SMARCD1/BAF60A, SMARCD3/BAF60C, SMARCA2/BRM/BAF190B, SMARCA4/BRG1/BAF190A, SMARCB1/BAF47, SMARCC1/BAF155, SMARCE1/BAF57, SMARCC2/BAF170, DPF1/BAF45B, DPF3/BAF45C, ACTL6B/BAF53B genes. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth.

IEA

MF

GO:0003677

DNA binding

Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).

IEA

MF

GO:0003713

transcription coactivator activity

Interacting selectively and non-covalently with a activating transcription factor and also with the basal transcription machinery in order to increase the frequency, rate or extent of transcription. Cofactors generally do not bind the template nucleic acid, but rather mediate protein-protein interactions between activating transcription factors and the basal transcription machinery.

NAS

Domain ID Description

IPR001606

ARID DNA-binding domain

IPR011989

Armadillo-like helical

IPR021906

SWI/SNF-like complex subunit BAF250/Osa

IPR033388

SWI/SNF-like complex subunit BAF250, C-terminal

No pathways found.

UMLS CUI UMLS Term

C0027819

Neuroblastoma

C2239176

Liver Carcinoma

Tissue Cell Type

bone marrow

hematopoietic cells

cerebellum

cells in molecular layer

cerebellum

Purkinje cells

cerebral cortex

neuronal cells

epididymis

glandular cells

esophagus

squamous epithelial cells

gallbladder

glandular cells

oral mucosa

squamous epithelial cells

parathyroid gland

glandular cells

seminal vesicle

glandular cells

spleen

cells in white pulp

thyroid gland

glandular cells

tonsil

squamous epithelial cells

urinary bladder

urothelial cells

vagina

squamous epithelial cells

Database Name

DisGeNET

Pubmed ID Author Year Title

22617121

Ouandaogo et al.

2012

Differences in transcriptomic profiles of human cumulus cells isolated from oocytes at GV, MI and MII stages after in vivo andin vitro oocyte maturation

Gene Symbol Entrez ID Uniprot ID Score

BCL7A

605

Q4VC05

0.49

BCL7C

9274

Q8WUZ0

0.49

BCL7B

9275

Q9BQE9

0.49

HIST2H2BE

8349

Q16778

0.56

ENO1

2023

P06733

0.63

SMAD9

4093

O15198

0.63

PYGM

5837

P11217

0.63

SMARCA1

6594

P28370

0.63

RBX1

9978

P62877

0.63

PRMT5

10419

O14744

0.63

TCEB1

6921

Q15369

0.68

CUL2

8453

Q13617

0.68

SMARCC2

6601

Q8TAQ2

0.74

SMARCD1

6602

Q96GM5

0.74

ARID1A

8289

O14497

0.74

ARID1B

57492

Q8NFD5

0.75

SMARCC1

6599

Q92922

0.89

SMARCA2

6595

P51531

0.96

SMARCA4

6597

P51532

0.97

ACTL6A

86

O96019

0.49

STIL

6491

Q15468

0.49

SMARCD2

6603

Q92925

0.49

SMARCD3

6604

Q6STE5

0.49

YAP1

10413

P46937

0.49

B9D2

80776

Q9BPU9

0.49

SPICE1

152185

Q8N0Z3

0.49

EPAS1

2034

Q99814

0.63

SMAD2

4087

Q15796

0.63

SUMO3

6612

P55854

0.63

SUMO2

6613

P61956

0.63

KDM5B

10765

Q9UGL1

0.63

QPRT

23475

Q15274

0.63

GABARAPL1

23710

Q9H0R8

0.63

CAND1

55832

Q86VP6

0.63

RELB

5971

Q01201

0.72

DPF2

5977

Q92785

0.73

SS18

6760

Q15532

0.73

DPF3

8110

Q92784

0.73

SMARCE1

6605

Q969G3

0.74

SMARCB1

6598

Q12824

0.83