Protein Description

Gene Symbol LRRC16A
Entrez ID 55604
Uniprot ID Q5VZK9
Description leucine rich repeat containing 16A
Chromosomal Location chr6: 25,279,078-25,620,530
Ontology GO ID GO Term Definition Evidence

BP

GO:0007015

actin filament organization

A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments. Includes processes that control the spatial distribution of actin filaments, such as organizing filaments into meshworks, bundles, or other structures, as by cross-linking.

NAS

BP

GO:0007596

blood coagulation

The sequential process in which the multiple coagulation factors of the blood interact, ultimately resulting in the formation of an insoluble fibrin clot; it may be divided into three stages: stage 1, the formation of intrinsic and extrinsic prothrombin converting principle; stage 2, the formation of thrombin; stage 3, the formation of stable fibrin polymers.

TAS

BP

GO:0016477

cell migration

The controlled self-propelled movement of a cell from one site to a destination guided by molecular cues. Cell migration is a central process in the development and maintenance of multicellular organisms.

IMP

BP

GO:0030032

lamellipodium assembly

Formation of a lamellipodium, a thin sheetlike extension of the surface of a migrating cell.

IMP

BP

GO:0030335

positive regulation of cell migration

Any process that activates or increases the frequency, rate or extent of cell migration.

IDA|IMP

BP

GO:0030838

positive regulation of actin filament polymerization

Any process that activates or increases the frequency, rate or extent of actin polymerization.

ISS

BP

GO:0031529

ruffle organization

A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a ruffle, a projection at the leading edge of a crawling cell.

IMP

BP

GO:0044351

macropinocytosis

An endocytosis process that results in the uptake of liquid material by cells from their external environment by the 'ruffling' of the cell membrane to form heterogeneously sized intracellular vesicles called macropinosomes, which can be up to 5 micrometers in size.

IDA

BP

GO:0046415

urate metabolic process

The chemical reactions and pathways involving urate, the anion of uric acid, 2,6,8-trioxypurine, the end product of purine metabolism in certain mammals and the main excretory product in uricotelic animals.

IMP

BP

GO:0051496

positive regulation of stress fiber assembly

Any process that activates or increases the frequency, rate or extent of the assembly of a stress fiber, a bundle of microfilaments and other proteins found in fibroblasts.

IMP

BP

GO:0051638

barbed-end actin filament uncapping

The removal of capping protein from the barbed (or plus) end of actin filaments to free the ends for addition, exchange or removal of further actin subunits.

ISS

BP

GO:0051639

actin filament network formation

The assembly of a network of actin filaments; actin filaments on different axes and with differing orientations are crosslinked together to form a mesh of filaments.

IDA

BP

GO:1900026

positive regulation of substrate adhesion-dependent cell spreading

Any process that activates or increases the frequency, rate or extent of substrate adhesion-dependent cell spreading.

IMP

BP

GO:1902745

positive regulation of lamellipodium organization

Any process that activates or increases the frequency, rate or extent of lamellipodium organization.

IDA

BP

GO:2000813

negative regulation of barbed-end actin filament capping

Any process that stops, prevents or reduces the frequency, rate or extent of barbed-end actin filament capping.

ISS

CC

GO:0005634

nucleus

A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

IDA

CC

GO:0005737

cytoplasm

All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

IDA

CC

GO:0005829

cytosol

The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.

TAS

CC

GO:0005886

plasma membrane

The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

IDA

CC

GO:0030027

lamellipodium

A thin sheetlike process extended by the leading edge of a migrating cell or extending cell process; contains a dense meshwork of actin filaments.

IDA

CC

GO:0031252

cell leading edge

The area of a motile cell closest to the direction of movement.

IDA

CC

GO:0031941

filamentous actin

A two-stranded helical polymer of the protein actin.

ISS

CC

GO:0044354

macropinosome

A membrane-bounded, uncoated intracellular vesicle formed by the process of macropinocytosis.

IDA

CC

GO:0070062

extracellular exosome

A membrane-bounded vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.

IDA

MF

GO:0005515

protein binding

Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

IPI

MF

GO:0032403

protein complex binding

Interacting selectively and non-covalently with any protein complex (a complex of two or more proteins that may include other nonprotein molecules).

IDA

Domain ID Description

IPR001611

Leucine-rich repeat

IPR029764

Leucine-rich repeat-containing protein 16A

IPR031943

CARMIL, C-terminal domain

IPR032675

Leucine-rich repeat domain, L domain-like

No pathways found.

No diseases found.

Tissue Cell Type

appendix

glandular cells

colon

glandular cells

duodenum

glandular cells

fallopian tube

glandular cells

gallbladder

glandular cells

placenta

decidual cells

placenta

trophoblastic cells

rectum

glandular cells

stomach

glandular cells

testis

cells in seminiferous ducts

No databases found.

Pubmed ID Author Year Title

22617121

Ouandaogo et al.

2012

Differences in transcriptomic profiles of human cumulus cells isolated from oocytes at GV, MI and MII stages after in vivo andin vitro oocyte maturation

22951915

Haozi et al.

2012

Altered gene expression profile in cumulus cells of mature MII oocytes from patients with polycystic ovary syndrome

Gene Symbol Entrez ID Uniprot ID Score

RPP30

10556

P78346

0.49

SLAIN2

57606

Q9P270

0.49

CAPZB

832

P47756

0.56

FGFR1OP

11116

O95684

0.49

KLC4

89953

Q9NSK0

0.49

GAN

8139

Q9H2C0

0.63

PAK4

10298

O96013

0.63

SH3KBP1

30011

Q96B97

0.63

HUWE1

10075

Q7Z6Z7

0.72

CAPZA2

830

P47755

0.83