Gene Symbol | LRRC16A |
Entrez ID | 55604 |
Uniprot ID | Q5VZK9 |
Description | leucine rich repeat containing 16A |
Chromosomal Location | chr6: 25,279,078-25,620,530 |
Ontology | GO ID | GO Term | Definition | Evidence |
---|---|---|---|---|
BP |
GO:0007015 |
actin filament organization |
A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments. Includes processes that control the spatial distribution of actin filaments, such as organizing filaments into meshworks, bundles, or other structures, as by cross-linking. |
NAS |
BP |
GO:0007596 |
blood coagulation |
The sequential process in which the multiple coagulation factors of the blood interact, ultimately resulting in the formation of an insoluble fibrin clot; it may be divided into three stages: stage 1, the formation of intrinsic and extrinsic prothrombin converting principle; stage 2, the formation of thrombin; stage 3, the formation of stable fibrin polymers. |
TAS |
BP |
GO:0016477 |
cell migration |
The controlled self-propelled movement of a cell from one site to a destination guided by molecular cues. Cell migration is a central process in the development and maintenance of multicellular organisms. |
IMP |
BP |
GO:0030032 |
lamellipodium assembly |
Formation of a lamellipodium, a thin sheetlike extension of the surface of a migrating cell. |
IMP |
BP |
GO:0030335 |
positive regulation of cell migration |
Any process that activates or increases the frequency, rate or extent of cell migration. |
IDA|IMP |
BP |
GO:0030838 |
positive regulation of actin filament polymerization |
Any process that activates or increases the frequency, rate or extent of actin polymerization. |
ISS |
BP |
GO:0031529 |
ruffle organization |
A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a ruffle, a projection at the leading edge of a crawling cell. |
IMP |
BP |
GO:0044351 |
macropinocytosis |
An endocytosis process that results in the uptake of liquid material by cells from their external environment by the 'ruffling' of the cell membrane to form heterogeneously sized intracellular vesicles called macropinosomes, which can be up to 5 micrometers in size. |
IDA |
BP |
GO:0046415 |
urate metabolic process |
The chemical reactions and pathways involving urate, the anion of uric acid, 2,6,8-trioxypurine, the end product of purine metabolism in certain mammals and the main excretory product in uricotelic animals. |
IMP |
BP |
GO:0051496 |
positive regulation of stress fiber assembly |
Any process that activates or increases the frequency, rate or extent of the assembly of a stress fiber, a bundle of microfilaments and other proteins found in fibroblasts. |
IMP |
BP |
GO:0051638 |
barbed-end actin filament uncapping |
The removal of capping protein from the barbed (or plus) end of actin filaments to free the ends for addition, exchange or removal of further actin subunits. |
ISS |
BP |
GO:0051639 |
actin filament network formation |
The assembly of a network of actin filaments; actin filaments on different axes and with differing orientations are crosslinked together to form a mesh of filaments. |
IDA |
BP |
GO:1900026 |
positive regulation of substrate adhesion-dependent cell spreading |
Any process that activates or increases the frequency, rate or extent of substrate adhesion-dependent cell spreading. |
IMP |
BP |
GO:1902745 |
positive regulation of lamellipodium organization |
Any process that activates or increases the frequency, rate or extent of lamellipodium organization. |
IDA |
BP |
GO:2000813 |
negative regulation of barbed-end actin filament capping |
Any process that stops, prevents or reduces the frequency, rate or extent of barbed-end actin filament capping. |
ISS |
CC |
GO:0005634 |
nucleus |
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. |
IDA |
CC |
GO:0005737 |
cytoplasm |
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. |
IDA |
CC |
GO:0005829 |
cytosol |
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. |
TAS |
CC |
GO:0005886 |
plasma membrane |
The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. |
IDA |
CC |
GO:0030027 |
lamellipodium |
A thin sheetlike process extended by the leading edge of a migrating cell or extending cell process; contains a dense meshwork of actin filaments. |
IDA |
CC |
GO:0031252 |
cell leading edge |
The area of a motile cell closest to the direction of movement. |
IDA |
CC |
GO:0031941 |
filamentous actin |
A two-stranded helical polymer of the protein actin. |
ISS |
CC |
GO:0044354 |
macropinosome |
A membrane-bounded, uncoated intracellular vesicle formed by the process of macropinocytosis. |
IDA |
CC |
GO:0070062 |
extracellular exosome |
A membrane-bounded vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm. |
IDA |
MF |
GO:0005515 |
protein binding |
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
IPI |
MF |
GO:0032403 |
protein complex binding |
Interacting selectively and non-covalently with any protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
IDA |
Domain ID | Description |
---|---|
IPR001611 |
Leucine-rich repeat |
IPR029764 |
Leucine-rich repeat-containing protein 16A |
IPR031943 |
CARMIL, C-terminal domain |
IPR032675 |
Leucine-rich repeat domain, L domain-like |
Tissue | Cell Type |
---|---|
appendix |
glandular cells |
colon |
glandular cells |
duodenum |
glandular cells |
fallopian tube |
glandular cells |
gallbladder |
glandular cells |
placenta |
decidual cells |
placenta |
trophoblastic cells |
rectum |
glandular cells |
stomach |
glandular cells |
testis |
cells in seminiferous ducts |
Pubmed ID | Author | Year | Title |
---|---|---|---|
22617121 |
Ouandaogo et al. |
2012 |
Differences in transcriptomic profiles of human cumulus cells isolated from oocytes at GV, MI and MII stages after in vivo andin vitro oocyte maturation |
22951915 |
Haozi et al. |
2012 |
Altered gene expression profile in cumulus cells of mature MII oocytes from patients with polycystic ovary syndrome |
Gene Symbol | Entrez ID | Uniprot ID | Score |
---|---|---|---|
RPP30 |
10556 |
P78346 |
0.49 |
SLAIN2 |
57606 |
Q9P270 |
0.49 |
CAPZB |
832 |
P47756 |
0.56 |
FGFR1OP |
11116 |
O95684 |
0.49 |
KLC4 |
89953 |
Q9NSK0 |
0.49 |
GAN |
8139 |
Q9H2C0 |
0.63 |
PAK4 |
10298 |
O96013 |
0.63 |
SH3KBP1 |
30011 |
Q96B97 |
0.63 |
HUWE1 |
10075 |
Q7Z6Z7 |
0.72 |
CAPZA2 |
830 |
P47755 |
0.83 |