Protein Description

Gene Symbol VCAN
Entrez ID 1462
Uniprot ID P13611
Description versican
Chromosomal Location chr5: 83,471,465-83,582,303
Ontology GO ID GO Term Definition Evidence

BP

GO:0001501

skeletal system development

The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton).

IBA

BP

GO:0001649

osteoblast differentiation

The process whereby a relatively unspecialized cell acquires the specialized features of an osteoblast, a mesodermal or neural crest cell that gives rise to bone.

IDA

BP

GO:0007155

cell adhesion

The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules.

IEA

BP

GO:0007275

multicellular organism development

The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult).

TAS

BP

GO:0007417

central nervous system development

The process whose specific outcome is the progression of the central nervous system over time, from its formation to the mature structure. The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain and spinal cord. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord.

IBA

BP

GO:0008037

cell recognition

The process in which a cell in an organism interprets its surroundings.

TAS

BP

GO:0030198

extracellular matrix organization

A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of an extracellular matrix.

TAS

BP

GO:0030203

glycosaminoglycan metabolic process

The chemical reactions and pathways involving glycosaminoglycans, any one of a group of polysaccharides that contain amino sugars. Formerly known as mucopolysaccharides, they include hyaluronic acid and chondroitin, which provide lubrication in joints and form part of the matrix of cartilage. The three-dimensional structure of these molecules enables them to trap water, which forms a gel and gives glycosaminoglycans their elastic properties.

TAS

BP

GO:0030206

chondroitin sulfate biosynthetic process

The chemical reactions and pathways resulting in the formation of chondroitin sulfate, any member of a group of 10-60 kDa glycosaminoglycans, widely distributed in cartilage and other mammalian connective tissues, the repeat units of which consist of beta-(1,4)-linked D-glucuronyl beta-(1,3)-N-acetyl-D-galactosamine sulfate.

TAS

BP

GO:0030207

chondroitin sulfate catabolic process

The chemical reactions and pathways resulting in the breakdown of chondroitin sulfate, any member of a group of 10-60 kDa glycosaminoglycans, widely distributed in cartilage and other mammalian connective tissues, the repeat units of which consist of beta-(1,4)-linked D-glucuronyl beta-(1,3)-N-acetyl-D-galactosamine sulfate.

TAS

BP

GO:0030208

dermatan sulfate biosynthetic process

The chemical reactions and pathways resulting in the formation of dermatan sulfate, any glycosaminoglycan with repeats consisting of beta-(1,4)-linked L-iduronyl-beta-(1,3)-N-acetyl-D-galactosamine 4-sulfate units.

TAS

CC

GO:0005576

extracellular region

The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

TAS

CC

GO:0005578

proteinaceous extracellular matrix

A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity. An example of this component is found in Mus musculus.

IEA

CC

GO:0005615

extracellular space

That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.

IDA

CC

GO:0005796

Golgi lumen

The volume enclosed by the membranes of any cisterna or subcompartment of the Golgi apparatus, including the cis- and trans-Golgi networks.

TAS

CC

GO:0016020

membrane

A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

IDA

CC

GO:0031012

extracellular matrix

A structure lying external to one or more cells, which provides structural support for cells or tissues.

IDA|ISS

CC

GO:0043202

lysosomal lumen

The volume enclosed within the lysosomal membrane.

TAS

CC

GO:0043231

intracellular membrane-bounded organelle

Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.

IDA

MF

GO:0005201

extracellular matrix structural constituent

The action of a molecule that contributes to the structural integrity of the extracellular matrix.

IBA

MF

GO:0005509

calcium ion binding

Interacting selectively and non-covalently with calcium ions (Ca2+).

IEA

MF

GO:0005539

glycosaminoglycan binding

Interacting selectively and non-covalently with any glycan (polysaccharide) containing a substantial proportion of aminomonosaccharide residues.

TAS

MF

GO:0005540

hyaluronic acid binding

Interacting selectively and non-covalently with hyaluronic acid, a polymer composed of repeating dimeric units of glucuronic acid and N-acetyl glucosamine.

IEA

MF

GO:0030246

carbohydrate binding

Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates.

IEA

Domain ID Description

IPR000152

EGF-type aspartate/asparagine hydroxylation site

IPR000436

Sushi/SCR/CCP domain

IPR000538

Link domain

IPR000742

EGF-like domain

IPR001304

C-type lectin-like

IPR001881

EGF-like calcium-binding domain

IPR003599

Immunoglobulin subtype

IPR007110

Immunoglobulin-like domain

IPR013032

EGF-like, conserved site

IPR013106

Immunoglobulin V-set domain

IPR013783

Immunoglobulin-like fold

IPR016186

C-type lectin-like/link domain

IPR016187

C-type lectin fold

IPR018097

EGF-like calcium-binding, conserved site

IPR018378

C-type lectin, conserved site

IPR033987

Aggrecan/versican, C-type lectin-like domain

Pathway ID Pathway Term Pathway Source

hsa04514

Cell adhesion molecules (CAMs)

KEGG

WP2431

Spinal Cord Injury

WikiPathways

UMLS CUI UMLS Term

C0010606

Adenoid Cystic Carcinoma

C0014175

Endometriosis

C0036095

Salivary Gland Neoplasms

No tissues found.

Database Name

GWASdb

Pubmed ID Author Year Title

17062763

Corton et al.

2007

Differential Gene Expression Profile in Omental Adipose Tissue in Women with Polycystic Ovary Syndrome

Gene Symbol Entrez ID Uniprot ID Score

MMP9

4318

P14780

0.09

SRGN

5552

P10124

0.09

VCAN

1462

P13611

0.52

CD44

960

P16070

0.75

CXCR3

2833

P49682

0.75

PF4

5196

P02776

0.75

CXCL12

6387

P48061

0.75

ACAN

176

P16112

0.78

HAPLN1

1404

P10915

0.79

CXCL10

3627

P02778

0.52

ITGA4

3676

P13612

0.52

ITGB1

3688

P05556

0.52

XCL1

6375

P47992

0.52

TNR

7143

Q92752

0.52

FBLN1

2192

P23142

0.62

PLA2G2A

5320

P14555

0.62

ATP1A1

476

P05023

0.63

BCAN

63827

Q96GW7

0.63

HSFX1

100130086

Q9UBD0

0.63

ADAMTS1

9510

Q9UHI8

0.65

SELPLG

6404

Q14242

0.67

FBN1

2200

P35555

0.75

CCL2

6347

P13500

0.75

CCL5

6352

P13501

0.75

CCL8

6355

P80075

0.75

CCL20

6364

P78556

0.75

SELL

6402

P14151

0.75

SELP

6403

P16109

0.75

FBLN2

2199

P98095

0.85

CCL21

6366

O00585

0.85