Gene Symbol | VCAN |
Entrez ID | 1462 |
Uniprot ID | P13611 |
Description | versican |
Chromosomal Location | chr5: 83,471,465-83,582,303 |
Ontology | GO ID | GO Term | Definition | Evidence |
---|---|---|---|---|
BP |
GO:0001501 |
skeletal system development |
The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton). |
IBA |
BP |
GO:0001649 |
osteoblast differentiation |
The process whereby a relatively unspecialized cell acquires the specialized features of an osteoblast, a mesodermal or neural crest cell that gives rise to bone. |
IDA |
BP |
GO:0007155 |
cell adhesion |
The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules. |
IEA |
BP |
GO:0007275 |
multicellular organism development |
The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult). |
TAS |
BP |
GO:0007417 |
central nervous system development |
The process whose specific outcome is the progression of the central nervous system over time, from its formation to the mature structure. The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain and spinal cord. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord. |
IBA |
BP |
GO:0008037 |
cell recognition |
The process in which a cell in an organism interprets its surroundings. |
TAS |
BP |
GO:0030198 |
extracellular matrix organization |
A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of an extracellular matrix. |
TAS |
BP |
GO:0030203 |
glycosaminoglycan metabolic process |
The chemical reactions and pathways involving glycosaminoglycans, any one of a group of polysaccharides that contain amino sugars. Formerly known as mucopolysaccharides, they include hyaluronic acid and chondroitin, which provide lubrication in joints and form part of the matrix of cartilage. The three-dimensional structure of these molecules enables them to trap water, which forms a gel and gives glycosaminoglycans their elastic properties. |
TAS |
BP |
GO:0030206 |
chondroitin sulfate biosynthetic process |
The chemical reactions and pathways resulting in the formation of chondroitin sulfate, any member of a group of 10-60 kDa glycosaminoglycans, widely distributed in cartilage and other mammalian connective tissues, the repeat units of which consist of beta-(1,4)-linked D-glucuronyl beta-(1,3)-N-acetyl-D-galactosamine sulfate. |
TAS |
BP |
GO:0030207 |
chondroitin sulfate catabolic process |
The chemical reactions and pathways resulting in the breakdown of chondroitin sulfate, any member of a group of 10-60 kDa glycosaminoglycans, widely distributed in cartilage and other mammalian connective tissues, the repeat units of which consist of beta-(1,4)-linked D-glucuronyl beta-(1,3)-N-acetyl-D-galactosamine sulfate. |
TAS |
BP |
GO:0030208 |
dermatan sulfate biosynthetic process |
The chemical reactions and pathways resulting in the formation of dermatan sulfate, any glycosaminoglycan with repeats consisting of beta-(1,4)-linked L-iduronyl-beta-(1,3)-N-acetyl-D-galactosamine 4-sulfate units. |
TAS |
CC |
GO:0005576 |
extracellular region |
The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. |
TAS |
CC |
GO:0005578 |
proteinaceous extracellular matrix |
A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity. An example of this component is found in Mus musculus. |
IEA |
CC |
GO:0005615 |
extracellular space |
That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid. |
IDA |
CC |
GO:0005796 |
Golgi lumen |
The volume enclosed by the membranes of any cisterna or subcompartment of the Golgi apparatus, including the cis- and trans-Golgi networks. |
TAS |
CC |
GO:0016020 |
membrane |
A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
IDA |
CC |
GO:0031012 |
extracellular matrix |
A structure lying external to one or more cells, which provides structural support for cells or tissues. |
IDA|ISS |
CC |
GO:0043202 |
lysosomal lumen |
The volume enclosed within the lysosomal membrane. |
TAS |
CC |
GO:0043231 |
intracellular membrane-bounded organelle |
Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. |
IDA |
MF |
GO:0005201 |
extracellular matrix structural constituent |
The action of a molecule that contributes to the structural integrity of the extracellular matrix. |
IBA |
MF |
GO:0005509 |
calcium ion binding |
Interacting selectively and non-covalently with calcium ions (Ca2+). |
IEA |
MF |
GO:0005539 |
glycosaminoglycan binding |
Interacting selectively and non-covalently with any glycan (polysaccharide) containing a substantial proportion of aminomonosaccharide residues. |
TAS |
MF |
GO:0005540 |
hyaluronic acid binding |
Interacting selectively and non-covalently with hyaluronic acid, a polymer composed of repeating dimeric units of glucuronic acid and N-acetyl glucosamine. |
IEA |
MF |
GO:0030246 |
carbohydrate binding |
Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates. |
IEA |
Domain ID | Description |
---|---|
IPR000152 |
EGF-type aspartate/asparagine hydroxylation site |
IPR000436 |
Sushi/SCR/CCP domain |
IPR000538 |
Link domain |
IPR000742 |
EGF-like domain |
IPR001304 |
C-type lectin-like |
IPR001881 |
EGF-like calcium-binding domain |
IPR003599 |
Immunoglobulin subtype |
IPR007110 |
Immunoglobulin-like domain |
IPR013032 |
EGF-like, conserved site |
IPR013106 |
Immunoglobulin V-set domain |
IPR013783 |
Immunoglobulin-like fold |
IPR016186 |
C-type lectin-like/link domain |
IPR016187 |
C-type lectin fold |
IPR018097 |
EGF-like calcium-binding, conserved site |
IPR018378 |
C-type lectin, conserved site |
IPR033987 |
Aggrecan/versican, C-type lectin-like domain |
Pathway ID | Pathway Term | Pathway Source |
---|---|---|
hsa04514 |
Cell adhesion molecules (CAMs) |
KEGG |
WP2431 |
Spinal Cord Injury |
WikiPathways |
UMLS CUI | UMLS Term |
---|---|
C0010606 |
Adenoid Cystic Carcinoma |
C0014175 |
Endometriosis |
C0036095 |
Salivary Gland Neoplasms |
Database Name |
---|
GWASdb |
Pubmed ID | Author | Year | Title |
---|---|---|---|
17062763 |
Corton et al. |
2007 |
Differential Gene Expression Profile in Omental Adipose Tissue in Women with Polycystic Ovary Syndrome |
Gene Symbol | Entrez ID | Uniprot ID | Score |
---|---|---|---|
MMP9 |
4318 |
P14780 |
0.09 |
SRGN |
5552 |
P10124 |
0.09 |
VCAN |
1462 |
P13611 |
0.52 |
CD44 |
960 |
P16070 |
0.75 |
CXCR3 |
2833 |
P49682 |
0.75 |
PF4 |
5196 |
P02776 |
0.75 |
CXCL12 |
6387 |
P48061 |
0.75 |
ACAN |
176 |
P16112 |
0.78 |
HAPLN1 |
1404 |
P10915 |
0.79 |
CXCL10 |
3627 |
P02778 |
0.52 |
ITGA4 |
3676 |
P13612 |
0.52 |
ITGB1 |
3688 |
P05556 |
0.52 |
XCL1 |
6375 |
P47992 |
0.52 |
TNR |
7143 |
Q92752 |
0.52 |
FBLN1 |
2192 |
P23142 |
0.62 |
PLA2G2A |
5320 |
P14555 |
0.62 |
ATP1A1 |
476 |
P05023 |
0.63 |
BCAN |
63827 |
Q96GW7 |
0.63 |
HSFX1 |
100130086 |
Q9UBD0 |
0.63 |
ADAMTS1 |
9510 |
Q9UHI8 |
0.65 |
SELPLG |
6404 |
Q14242 |
0.67 |
FBN1 |
2200 |
P35555 |
0.75 |
CCL2 |
6347 |
P13500 |
0.75 |
CCL5 |
6352 |
P13501 |
0.75 |
CCL8 |
6355 |
P80075 |
0.75 |
CCL20 |
6364 |
P78556 |
0.75 |
SELL |
6402 |
P14151 |
0.75 |
SELP |
6403 |
P16109 |
0.75 |
FBLN2 |
2199 |
P98095 |
0.85 |
CCL21 |
6366 |
O00585 |
0.85 |