Protein Description

Gene Symbol POLR1D
Entrez ID 51082
Uniprot ID Q9Y2S0
Description polymerase (RNA) I polypeptide D
Chromosomal Location chr13: 27,620,742-27,744,237
Ontology GO ID GO Term Definition Evidence

BP

GO:0006361

transcription initiation from RNA polymerase I promoter

Any process involved in the assembly of the RNA polymerase I preinitiation complex (PIC) at an RNA polymerase I promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. Promoter clearance, or release, is the transition between the initiation and elongation phases of transcription.

TAS

BP

GO:0006362

transcription elongation from RNA polymerase I promoter

The extension of an RNA molecule after transcription initiation and promoter clearance at an RNA polymerase I specific promoter by the addition of ribonucleotides catalyzed by RNA polymerase I.

TAS

BP

GO:0006363

termination of RNA polymerase I transcription

The process in which the synthesis of an RNA molecule by RNA polymerase I using a DNA template is completed. RNAP I termination requires binding of a terminator protein so specific sequences downstream of the transcription unit.

TAS

BP

GO:0006383

transcription from RNA polymerase III promoter

The synthesis of RNA from a DNA template by RNA polymerase III, originating at an RNAP III promoter.

IEA

BP

GO:0032481

positive regulation of type I interferon production

Any process that activates or increases the frequency, rate, or extent of type I interferon production. Type I interferons include the interferon-alpha, beta, delta, episilon, zeta, kappa, tau, and omega gene families.

TAS

BP

GO:0045815

positive regulation of gene expression, epigenetic

Any epigenetic process that activates or increases the rate of gene expression.

TAS

CC

GO:0005654

nucleoplasm

That part of the nuclear content other than the chromosomes or the nucleolus.

TAS

CC

GO:0005666

DNA-directed RNA polymerase III complex

RNA polymerase III, one of three nuclear DNA-directed RNA polymerases found in all eukaryotes, is a multisubunit complex; typically it produces 5S rRNA, tRNAs and some of the small nuclear RNAs. Two large subunits comprise the most conserved portion including the catalytic site and share similarity with other eukaryotic and bacterial multisubunit RNA polymerases. The remainder of the complex is composed of smaller subunits (generally ten or more), some of which are also found in RNA polymerase I and others of which are also found in RNA polymerases I and II. Although the core is competent to mediate ribonucleic acid synthesis, it requires additional factors to select the appropriate template.

IBA

CC

GO:0005736

DNA-directed RNA polymerase I complex

RNA polymerase I, one of three nuclear DNA-directed RNA polymerases found in all eukaryotes, is a multisubunit complex; typically it produces rRNAs. Two large subunits comprise the most conserved portion including the catalytic site and share similarity with other eukaryotic and bacterial multisubunit RNA polymerases. The remainder of the complex is composed of smaller subunits (generally ten or more), some of which are also found in RNA polymerase III and others of which are also found in RNA polymerases II and III. Although the core is competent to mediate ribonucleic acid synthesis, it requires additional factors to select the appropriate template.

IBA

CC

GO:0005829

cytosol

The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.

TAS

MF

GO:0001054

RNA polymerase I activity

Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template that contains an RNA polymerase I specific promoter to direct initiation and catalyzes DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.

IBA

MF

GO:0001056

RNA polymerase III activity

Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template that contains an RNA polymerase III specific promoter to direct initiation and catalyses DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.

IBA

MF

GO:0003677

DNA binding

Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).

IEA

MF

GO:0005515

protein binding

Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

IPI

MF

GO:0046983

protein dimerization activity

The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits.

IEA

Domain ID Description

IPR008193

DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved site

IPR009025

DNA-directed RNA polymerase, RBP11-like dimerisation domain

IPR033898

DNA-directed RNA polymerases I and III subunit AC19

Pathway ID Pathway Term Pathway Source

hsa00230

Purine metabolism

KEGG

hsa00240

Pyrimidine metabolism

KEGG

hsa01100

Metabolic pathways

KEGG

hsa03020

RNA polymerase

KEGG

hsa04623

Cytosolic DNA-sensing pathway

KEGG

hsa05169

Epstein-Barr virus infection

KEGG

WP405

Eukaryotic Transcription Initiation

WikiPathways

h_arfPathway

Tumor Suppressor Arf Inhibits Ribosomal Biogenesis

BioCarta

UMLS CUI UMLS Term

C0236969

Substance-Related Disorders

C0242387

Mandibulofacial Dysostosis

Tissue Cell Type

adrenal gland

glandular cells

caudate

glial cells

caudate

neuronal cells

cerebellum

Purkinje cells

cerebral cortex

glial cells

cerebral cortex

neuronal cells

colon

glandular cells

duodenum

glandular cells

endometrium

glandular cells

epididymis

glandular cells

fallopian tube

glandular cells

gallbladder

glandular cells

hippocampus

neuronal cells

liver

bile duct cells

liver

hepatocytes

lung

macrophages

nasopharynx

respiratory epithelial cells

rectum

glandular cells

seminal vesicle

glandular cells

skin

fibroblasts

skin

melanocytes

small intestine

glandular cells

soft tissue

chondrocytes

stomach

glandular cells

urinary bladder

urothelial cells

No databases found.

Pubmed ID Author Year Title

22951915

Haozi et al.

2012

Altered gene expression profile in cumulus cells of mature MII oocytes from patients with polycystic ovary syndrome

Gene Symbol Entrez ID Uniprot ID Score

DCAF13

25879

Q9NV06

0.49

NOB1

28987

Q9ULX3

0.49

GRWD1

83743

Q9BQ67

0.49

POLR3F

10621

Q9H1D9

0.56

DDIT3

1649

P35638

0.63

PCYT1A

5130

P49585

0.63

PXN

5829

P49023

0.63

DNAJB6

10049

O75190

0.63

POLR3A

11128

O14802

0.65

CRCP

27297

O75575

0.65

POLR3B

55703

Q9NW08

0.65

POLR2C

5432

P19387

0.68

POLR1C

9533

O15160

0.84

DDX18

8886

Q9NVP1

0.49

POLR3C

10623

Q9BUI4

0.49

NOP9

161424

Q86U38

0.49

POLR2E

5434

P19388

0.56

POLR2H

5437

P52434

0.56

POLR2L

5441

P62875

0.56

TSR1

55720

Q2NL82

0.56

POLR1E

64425

Q9GZS1

0.59

CDC25A

993

P30304

0.63

CRKL

1399

P46109

0.63

E2F4

1874

Q16254

0.63

GRB2

2885

P62993

0.63

NR3C1

2908

P04150

0.63

MAGEA11

4110

P43364

0.63

MRPL12

6182

P52815

0.63

SKAP1

8631

Q86WV1

0.63

HAX1

10456

O00165

0.63

CD3EAP

10849

O15446

0.63

DNAJB4

11080

Q9UDY4

0.63

GPN3

51184

Q9UHW5

0.63

POLR1B

84172

Q9H9Y6

0.65

CDC42

998

P60953

0.72

CDK8

1024

P49336

0.72

NFKBIB

4793

Q15653

0.73

TWISTNB

221830

Q3B726

0.73

POLR2F

5435

P61218

0.79

POLR3D

661

P05423

0.83

POLR3H

171568

Q9Y535

0.89

POLR1A

25885

O95602

0.91