Gene Symbol | PDLIM1 |
Entrez ID | 9124 |
Uniprot ID | O00151 |
Description | PDZ and LIM domain 1 |
Chromosomal Location | chr10: 95,237,572-95,291,024 |
Ontology | GO ID | GO Term | Definition | Evidence |
---|---|---|---|---|
BP |
GO:0001666 |
response to hypoxia |
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level. |
IEA |
BP |
GO:0006355 |
regulation of transcription, DNA-templated |
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
IEA |
BP |
GO:0006979 |
response to oxidative stress |
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals. |
TAS |
BP |
GO:0098609 |
cell-cell adhesion |
The attachment of one cell to another cell via adhesion molecules. |
IEA |
CC |
GO:0005667 |
transcription factor complex |
A protein complex that is capable of associating with DNA by direct binding, or via other DNA-binding proteins or complexes, and regulating transcription. |
IEA |
CC |
GO:0005737 |
cytoplasm |
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. |
IEA |
CC |
GO:0005856 |
cytoskeleton |
Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles. |
IEA |
CC |
GO:0005913 |
cell-cell adherens junction |
An adherens junction which connects a cell to another cell. |
IDA |
CC |
GO:0005925 |
focal adhesion |
Small region on the surface of a cell that anchors the cell to the extracellular matrix and that forms a point of termination of actin filaments. |
IDA |
MF |
GO:0003713 |
transcription coactivator activity |
Interacting selectively and non-covalently with a activating transcription factor and also with the basal transcription machinery in order to increase the frequency, rate or extent of transcription. Cofactors generally do not bind the template nucleic acid, but rather mediate protein-protein interactions between activating transcription factors and the basal transcription machinery. |
IEA |
MF |
GO:0008270 |
zinc ion binding |
Interacting selectively and non-covalently with zinc (Zn) ions. |
IEA |
MF |
GO:0098641 |
cadherin binding involved in cell-cell adhesion |
Any cadherin binding that occurs as part of the process of cell-cell adhesion. |
IDA |
Domain ID | Description |
---|---|
IPR001478 |
PDZ domain |
IPR001781 |
Zinc finger, LIM-type |
IPR006643 |
Zasp-like motif |
IPR028537 |
PDZ and LIM domain protein 1 |
IPR031847 |
Domain of unknown function DUF4749 |
Tissue | Cell Type |
---|---|
appendix |
glandular cells |
appendix |
lymphoid tissue |
colon |
glandular cells |
lymph node |
germinal center cells |
lymph node |
non-germinal center cells |
placenta |
decidual cells |
seminal vesicle |
glandular cells |
spleen |
cells in red pulp |
testis |
cells in seminiferous ducts |
tonsil |
germinal center cells |
tonsil |
non-germinal center cells |
Pubmed ID | Author | Year | Title |
---|---|---|---|
22617121 |
Ouandaogo et al. |
2012 |
Differences in transcriptomic profiles of human cumulus cells isolated from oocytes at GV, MI and MII stages after in vivo andin vitro oocyte maturation |
23824412 |
Piltonen et al. |
2013 |
Mesenchymal Stem/Progenitors and Other Endometrial Cell Types From Women With Polycystic Ovary Syndrome (PCOS) Display Inflammatory and Oncogenic Potential |
Gene Symbol | Entrez ID | Uniprot ID | Score |
---|---|---|---|
STMN1 |
3925 |
P16949 |
0.49 |
PNPT1 |
87178 |
Q8TCS8 |
0.49 |
PITX2 |
5308 |
Q99697 |
0.59 |
ACTN3 |
89 |
Q08043 |
0.63 |
HK2 |
3099 |
P52789 |
0.63 |
NUBP1 |
4682 |
P53384 |
0.63 |
PGS1 |
9489 |
Q32NB8 |
0.63 |
ARIH2 |
10425 |
O95376 |
0.63 |
RANGRF |
29098 |
Q9HD47 |
0.63 |
AGK |
55750 |
Q53H12 |
0.63 |
NUDT12 |
83594 |
Q9BQG2 |
0.63 |
ESR1 |
2099 |
P03372 |
0.72 |
PDLIM1 |
9124 |
O00151 |
0.72 |
ACTN2 |
88 |
P35609 |
0.84 |
ACTN4 |
81 |
O43707 |
0.90 |
ACTN1 |
87 |
P12814 |
0.90 |
CLNS1A |
1207 |
P54105 |
0.49 |
HSPB1 |
3315 |
P04792 |
0.49 |
IGBP1 |
3476 |
P78318 |
0.49 |
GFAP |
2670 |
P14136 |
0.63 |
MAPK6 |
5597 |
Q16659 |
0.63 |
SUPT4H1 |
6827 |
P63272 |
0.63 |
VIM |
7431 |
P08670 |
0.63 |
RPS6KA5 |
9252 |
O75582 |
0.63 |
CUL7 |
9820 |
Q14999 |
0.63 |
EIF1B |
10289 |
O60739 |
0.63 |
NXF1 |
10482 |
Q9UBU9 |
0.63 |
RLIM |
51132 |
Q9NVW2 |
0.63 |
LUZP4 |
51213 |
Q9P127 |
0.63 |
FLJ10842 |
N/A |
Q75KN0 |
0.63 |
LIMA1 |
51474 |
Q9UHB6 |
0.72 |
FBXO31 |
79791 |
Q5XUX0 |
0.72 |
STK35 |
140901 |
Q8TDR2 |
0.78 |