Protein Description

Gene Symbol PDLIM1
Entrez ID 9124
Uniprot ID O00151
Description PDZ and LIM domain 1
Chromosomal Location chr10: 95,237,572-95,291,024
Ontology GO ID GO Term Definition Evidence

BP

GO:0001666

response to hypoxia

Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level.

IEA

BP

GO:0006355

regulation of transcription, DNA-templated

Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.

IEA

BP

GO:0006979

response to oxidative stress

Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.

TAS

BP

GO:0098609

cell-cell adhesion

The attachment of one cell to another cell via adhesion molecules.

IEA

CC

GO:0005667

transcription factor complex

A protein complex that is capable of associating with DNA by direct binding, or via other DNA-binding proteins or complexes, and regulating transcription.

IEA

CC

GO:0005737

cytoplasm

All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

IEA

CC

GO:0005856

cytoskeleton

Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles.

IEA

CC

GO:0005913

cell-cell adherens junction

An adherens junction which connects a cell to another cell.

IDA

CC

GO:0005925

focal adhesion

Small region on the surface of a cell that anchors the cell to the extracellular matrix and that forms a point of termination of actin filaments.

IDA

MF

GO:0003713

transcription coactivator activity

Interacting selectively and non-covalently with a activating transcription factor and also with the basal transcription machinery in order to increase the frequency, rate or extent of transcription. Cofactors generally do not bind the template nucleic acid, but rather mediate protein-protein interactions between activating transcription factors and the basal transcription machinery.

IEA

MF

GO:0008270

zinc ion binding

Interacting selectively and non-covalently with zinc (Zn) ions.

IEA

MF

GO:0098641

cadherin binding involved in cell-cell adhesion

Any cadherin binding that occurs as part of the process of cell-cell adhesion.

IDA

Domain ID Description

IPR001478

PDZ domain

IPR001781

Zinc finger, LIM-type

IPR006643

Zasp-like motif

IPR028537

PDZ and LIM domain protein 1

IPR031847

Domain of unknown function DUF4749

No pathways found.

No diseases found.

Tissue Cell Type

appendix

glandular cells

appendix

lymphoid tissue

colon

glandular cells

lymph node

germinal center cells

lymph node

non-germinal center cells

placenta

decidual cells

seminal vesicle

glandular cells

spleen

cells in red pulp

testis

cells in seminiferous ducts

tonsil

germinal center cells

tonsil

non-germinal center cells

No databases found.

Pubmed ID Author Year Title

22617121

Ouandaogo et al.

2012

Differences in transcriptomic profiles of human cumulus cells isolated from oocytes at GV, MI and MII stages after in vivo andin vitro oocyte maturation

23824412

Piltonen et al.

2013

Mesenchymal Stem/Progenitors and Other Endometrial Cell Types From Women With Polycystic Ovary Syndrome (PCOS) Display Inflammatory and Oncogenic Potential

Gene Symbol Entrez ID Uniprot ID Score

STMN1

3925

P16949

0.49

PNPT1

87178

Q8TCS8

0.49

PITX2

5308

Q99697

0.59

ACTN3

89

Q08043

0.63

HK2

3099

P52789

0.63

NUBP1

4682

P53384

0.63

PGS1

9489

Q32NB8

0.63

ARIH2

10425

O95376

0.63

RANGRF

29098

Q9HD47

0.63

AGK

55750

Q53H12

0.63

NUDT12

83594

Q9BQG2

0.63

ESR1

2099

P03372

0.72

PDLIM1

9124

O00151

0.72

ACTN2

88

P35609

0.84

ACTN4

81

O43707

0.90

ACTN1

87

P12814

0.90

CLNS1A

1207

P54105

0.49

HSPB1

3315

P04792

0.49

IGBP1

3476

P78318

0.49

GFAP

2670

P14136

0.63

MAPK6

5597

Q16659

0.63

SUPT4H1

6827

P63272

0.63

VIM

7431

P08670

0.63

RPS6KA5

9252

O75582

0.63

CUL7

9820

Q14999

0.63

EIF1B

10289

O60739

0.63

NXF1

10482

Q9UBU9

0.63

RLIM

51132

Q9NVW2

0.63

LUZP4

51213

Q9P127

0.63

FLJ10842

N/A

Q75KN0

0.63

LIMA1

51474

Q9UHB6

0.72

FBXO31

79791

Q5XUX0

0.72

STK35

140901

Q8TDR2

0.78