Protein Description

Gene Symbol PDXK
Entrez ID 8566
Uniprot ID O00764
Description pyridoxal (pyridoxine, vitamin B6) kinase
Chromosomal Location chr21: 43,719,094-43,762,307
Ontology GO ID GO Term Definition Evidence

BP

GO:0008283

cell proliferation

The multiplication or reproduction of cells, resulting in the expansion of a cell population.

IDA

BP

GO:0009443

pyridoxal 5'-phosphate salvage

Any process that generates pyridoxal 5'-phosphate, the active form of vitamin B6, from derivatives of it without de novo synthesis.

IBA

BP

GO:0016310

phosphorylation

The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.

IEA

BP

GO:0042816

vitamin B6 metabolic process

The chemical reactions and pathways involving any of the vitamin B6 compounds: pyridoxal, pyridoxamine and pyridoxine and the active form, pyridoxal phosphate.

IBA|IC|TAS

BP

GO:0042823

pyridoxal phosphate biosynthetic process

The chemical reactions and pathways resulting in the formation of pyridoxal phosphate, pyridoxal phosphorylated at the hydroxymethyl group of C-5, the active form of vitamin B6.

IDA

CC

GO:0005634

nucleus

A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

IDA

CC

GO:0005654

nucleoplasm

That part of the nuclear content other than the chromosomes or the nucleolus.

IDA

CC

GO:0005737

cytoplasm

All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

IDA

CC

GO:0005829

cytosol

The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.

IDA|TAS

CC

GO:0070062

extracellular exosome

A membrane-bounded vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.

IDA

MF

GO:0000287

magnesium ion binding

Interacting selectively and non-covalently with magnesium (Mg) ions.

IDA

MF

GO:0005524

ATP binding

Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.

IDA

MF

GO:0008270

zinc ion binding

Interacting selectively and non-covalently with zinc (Zn) ions.

IDA

MF

GO:0008478

pyridoxal kinase activity

Catalysis of the reaction: ATP + pyridoxal = ADP + pyridoxal 5'-phosphate.

IDA|TAS

MF

GO:0030170

pyridoxal phosphate binding

Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6.

IDA

MF

GO:0030955

potassium ion binding

Interacting selectively and non-covalently with potassium (K+) ions.

IDA

MF

GO:0031402

sodium ion binding

Interacting selectively and non-covalently with sodium ions (Na+).

IDA

MF

GO:0031403

lithium ion binding

Interacting selectively and non-covalently with lithium ions (Li+).

IDA

MF

GO:0042803

protein homodimerization activity

Interacting selectively and non-covalently with an identical protein to form a homodimer.

IDA

Domain ID Description

IPR004625

Pyridoxine kinase

IPR013749

Pyridoxamine kinase/Phosphomethylpyrimidine kinase

IPR029056

Ribokinase-like

Pathway ID Pathway Term Pathway Source

hsa00750

Vitamin B6 metabolism

KEGG

hsa01100

Metabolic pathways

KEGG

UMLS CUI UMLS Term

C0038220

Status Epilepticus

Tissue Cell Type

cerebral cortex

glial cells

No databases found.

Pubmed ID Author Year Title

22617121

Ouandaogo et al.

2012

Differences in transcriptomic profiles of human cumulus cells isolated from oocytes at GV, MI and MII stages after in vivo andin vitro oocyte maturation

22951915

Haozi et al.

2012

Altered gene expression profile in cumulus cells of mature MII oocytes from patients with polycystic ovary syndrome

Gene Symbol Entrez ID Uniprot ID Score

ABAT

18

P80404

0.49

RABIF

5877

P47224

0.49

TPI1

7167

P60174

0.49

OGT

8473

O15294

0.49

EIF4E

1977

P06730

0.49

G6PD

2539

P11413

0.49

ITPA

3704

Q9BY32

0.49

MDH1

4190

P40925

0.49

OAT

4942

P04181

0.49

SNX2

6643

O60749

0.49

SOD1

6647

P00441

0.49

EZR

7430

P15311

0.49

HIBADH

11112

P31937

0.49

HYI

81888

Q5T013

0.49

BARD1

580

Q99728

0.63

ELAVL1

1994

Q15717

0.63

MOV10

4343

Q9HCE1

0.63

NEDD8

4738

Q15843

0.63

PRKAB1

5564

Q9Y478

0.63

SUMO1

7341

P63165

0.63

CUL3

8452

Q13618

0.63

CUL1

8454

Q13616

0.63

IKBKE

9641

Q14164

0.63

KIAA0101

9768

Q15004

0.63

NXF1

10482

Q9UBU9

0.63

COPS5

10987

Q92905

0.63

GABARAP

11337

O95166

0.63

GABARAPL2

11345

P60520

0.63

CAND1

55832

Q86VP6

0.63

MAP1LC3B

81631

Q9GZQ8

0.63

MAP1LC3A

84557

Q9H492

0.63

YWHAZ

7534

P63104

0.68

YWHAQ

10971

P27348

0.68