Gene Symbol | RAD54L |
Entrez ID | 8438 |
Uniprot ID | Q92698 |
Description | RAD54-like (S. cerevisiae) |
Chromosomal Location | chr1: 46,247,688-46,278,473 |
Ontology | GO ID | GO Term | Definition | Evidence |
---|---|---|---|---|
BP |
GO:0000724 |
double-strand break repair via homologous recombination |
The error-free repair of a double-strand break in DNA in which the broken DNA molecule is repaired using homologous sequences. A strand in the broken DNA searches for a homologous region in an intact chromosome to serve as the template for DNA synthesis. The restoration of two intact DNA molecules results in the exchange, reciprocal or nonreciprocal, of genetic material between the intact DNA molecule and the broken DNA molecule. |
IEA |
BP |
GO:0000733 |
DNA strand renaturation |
The identification and annealing of complementary base pairs in single-strand DNA. |
IEA |
BP |
GO:0006281 |
DNA repair |
The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. |
TAS |
BP |
GO:0006310 |
DNA recombination |
Any process in which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Intrachromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction. |
TAS |
BP |
GO:0007126 |
meiotic nuclear division |
One of the two nuclear divisions that occur as part of the meiotic cell cycle. |
TAS |
BP |
GO:0008340 |
determination of adult lifespan |
The control of viability and duration in the adult phase of the life-cycle. |
IEA |
BP |
GO:0010212 |
response to ionizing radiation |
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a ionizing radiation stimulus. Ionizing radiation is radiation with sufficient energy to remove electrons from atoms and may arise from spontaneous decay of unstable isotopes, resulting in alpha and beta particles and gamma rays. Ionizing radiation also includes X-rays. |
IEA |
BP |
GO:0042493 |
response to drug |
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease. |
IEA |
BP |
GO:0051276 |
chromosome organization |
A process that is carried out at the cellular level that results in the assembly, arrangement of constituent parts, or disassembly of chromosomes, structures composed of a very long molecule of DNA and associated proteins that carries hereditary information. This term covers covalent modifications at the molecular level as well as spatial relationships among the major components of a chromosome. |
IEA |
CC |
GO:0005634 |
nucleus |
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. |
TAS |
CC |
GO:0005654 |
nucleoplasm |
That part of the nuclear content other than the chromosomes or the nucleolus. |
IDA |
MF |
GO:0003677 |
DNA binding |
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
IEA |
MF |
GO:0004386 |
helicase activity |
Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix. |
IEA |
MF |
GO:0005524 |
ATP binding |
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
IEA |
MF |
GO:0036310 |
annealing helicase activity |
Catalysis of the ATP-dependent rewinding of single-stranded DNA (ssDNA) to reform base pairs between strands. Often acts on ssDNA bubbles bound by replication protein A (RPA). |
IDA |
Domain ID | Description |
---|---|
IPR000330 |
SNF2-related, N-terminal domain |
IPR001650 |
Helicase, C-terminal |
IPR014001 |
Helicase superfamily 1/2, ATP-binding domain |
IPR027417 |
P-loop containing nucleoside triphosphate hydrolase |
Pathway ID | Pathway Term | Pathway Source |
---|---|---|
hsa03440 |
Homologous recombination |
KEGG |
WP1984 |
Integrated Breast Cancer Pathway |
WikiPathways |
UMLS CUI | UMLS Term |
---|---|
C0024305 |
Lymphoma, Non-Hodgkin |
C1458155 |
Mammary Neoplasms |
Tissue | Cell Type |
---|---|
bronchus |
respiratory epithelial cells |
colon |
glandular cells |
epididymis |
glandular cells |
fallopian tube |
glandular cells |
gallbladder |
glandular cells |
nasopharynx |
respiratory epithelial cells |
placenta |
decidual cells |
placenta |
trophoblastic cells |
rectum |
glandular cells |
stomach |
glandular cells |
thyroid gland |
glandular cells |
urinary bladder |
urothelial cells |
Pubmed ID | Author | Year | Title |
---|---|---|---|
22617121 |
Ouandaogo et al. |
2012 |
Differences in transcriptomic profiles of human cumulus cells isolated from oocytes at GV, MI and MII stages after in vivo andin vitro oocyte maturation |
Gene Symbol | Entrez ID | Uniprot ID | Score |
---|---|---|---|
WDYHV1 |
55093 |
Q96HA8 |
0.63 |
RAD51 |
5888 |
Q06609 |
0.64 |
E2F4 |
1874 |
Q16254 |
0.52 |
HECW2 |
57520 |
Q9P2P5 |
0.63 |
LIMK1 |
3984 |
P53667 |
0.72 |
NCK1 |
4690 |
P16333 |
0.72 |
BAG6 |
7917 |
P46379 |
0.72 |
SGTB |
54557 |
Q96EQ0 |
0.72 |
TNKS2 |
80351 |
Q9H2K2 |
0.77 |