Gene Symbol | ACTN1 |
Entrez ID | 87 |
Uniprot ID | P12814 |
Description | actinin, alpha 1 |
Chromosomal Location | chr14: 68,874,143-68,979,440 |
Ontology | GO ID | GO Term | Definition | Evidence |
---|---|---|---|---|
BP |
GO:0002576 |
platelet degranulation |
The regulated exocytosis of secretory granules containing preformed mediators such as histamine and serotonin by a platelet. |
TAS |
BP |
GO:0007015 |
actin filament organization |
A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments. Includes processes that control the spatial distribution of actin filaments, such as organizing filaments into meshworks, bundles, or other structures, as by cross-linking. |
IMP |
BP |
GO:0030220 |
platelet formation |
The process in which platelets bud from long processes extended by megakaryocytes. |
IMP |
BP |
GO:0036344 |
platelet morphogenesis |
Generation and organization of a platelet, a non-nucleated disk-shaped cell formed by extrusion from megakaryocytes, found in the blood of all mammals, and mainly involved in blood coagulation. |
IMP |
BP |
GO:0042981 |
regulation of apoptotic process |
Any process that modulates the occurrence or rate of cell death by apoptotic process. |
NAS |
BP |
GO:0048041 |
focal adhesion assembly |
The aggregation and bonding together of a set of components to form a focal adhesion, a complex of intracellular signaling and structural proteins that provides a structural link between the internal actin cytoskeleton and the ECM, and also function as a locus of signal transduction activity. |
IMP |
BP |
GO:0051017 |
actin filament bundle assembly |
The assembly of actin filament bundles; actin filaments are on the same axis but may be oriented with the same or opposite polarities and may be packed with different levels of tightness. |
IEA |
BP |
GO:0051271 |
negative regulation of cellular component movement |
Any process that stops, prevents, or reduces the frequency, rate or extent of the movement of a cellular component. |
IMP |
BP |
GO:0051639 |
actin filament network formation |
The assembly of a network of actin filaments; actin filaments on different axes and with differing orientations are crosslinked together to form a mesh of filaments. |
IMP |
BP |
GO:0051764 |
actin crosslink formation |
The process in which two or more actin filaments are connected together by proteins that act as crosslinks between the filaments. The crosslinked filaments may be on the same or differing axes. |
IEA |
BP |
GO:1903506 |
regulation of nucleic acid-templated transcription |
Any process that modulates the frequency, rate or extent of nucleic acid-templated transcription. |
IEA |
CC |
GO:0001725 |
stress fiber |
A contractile actin filament bundle that consists of short actin filaments with alternating polarity, cross-linked by alpha-actinin and possibly other actin bundling proteins, and with myosin present in a periodic distribution along the fiber. |
IDA |
CC |
GO:0001726 |
ruffle |
Projection at the leading edge of a crawling cell; the protrusions are supported by a microfilament meshwork. |
IDA |
CC |
GO:0005576 |
extracellular region |
The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. |
TAS |
CC |
GO:0005615 |
extracellular space |
That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid. |
IDA |
CC |
GO:0005622 |
intracellular |
The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. |
IDA |
CC |
GO:0005737 |
cytoplasm |
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. |
IDA |
CC |
GO:0005829 |
cytosol |
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. |
TAS |
CC |
GO:0005884 |
actin filament |
A filamentous structure formed of a two-stranded helical polymer of the protein actin and associated proteins. Actin filaments are a major component of the contractile apparatus of skeletal muscle and the microfilaments of the cytoskeleton of eukaryotic cells. The filaments, comprising polymerized globular actin molecules, appear as flexible structures with a diameter of 5-9 nm. They are organized into a variety of linear bundles, two-dimensional networks, and three dimensional gels. In the cytoskeleton they are most highly concentrated in the cortex of the cell just beneath the plasma membrane. |
IDA |
CC |
GO:0005886 |
plasma membrane |
The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. |
IEA |
CC |
GO:0005903 |
brush border |
The dense covering of microvilli on the apical surface of a epithelial cells in tissues such as the intestine, kidney, and choroid plexus; the microvilli aid absorption by increasing the surface area of the cell. |
IEA |
CC |
GO:0005911 |
cell-cell junction |
A cell junction that forms a connection between two or more cells in a multicellular organism; excludes direct cytoplasmic junctions such as ring canals. |
IDA |
CC |
GO:0005916 |
fascia adherens |
A cell-cell adherens junction that contains the transmembrane protein N-cadherin, which interacts with identical molecules from neighboring cells to form a tight mechanical intercellular link; forms a large portion of the intercalated disc, the structure at which myofibrils terminate in cardiomyocytes. |
IEA |
CC |
GO:0005925 |
focal adhesion |
Small region on the surface of a cell that anchors the cell to the extracellular matrix and that forms a point of termination of actin filaments. |
IDA|IMP |
CC |
GO:0030018 |
Z disc |
Platelike region of a muscle sarcomere to which the plus ends of actin filaments are attached. |
IEA |
CC |
GO:0031093 |
platelet alpha granule lumen |
The volume enclosed by the membrane of the platelet alpha granule. |
TAS |
CC |
GO:0031143 |
pseudopodium |
A temporary protrusion or retractile process of a cell, associated with flowing movements of the protoplasm, and serving for locomotion and feeding. |
TAS |
CC |
GO:0042995 |
cell projection |
A prolongation or process extending from a cell, e.g. a flagellum or axon. |
IDA |
CC |
GO:0070062 |
extracellular exosome |
A membrane-bounded vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm. |
IDA |
MF |
GO:0003725 |
double-stranded RNA binding |
Interacting selectively and non-covalently with double-stranded RNA. |
IDA |
MF |
GO:0005178 |
integrin binding |
Interacting selectively and non-covalently with an integrin. |
IDA|IPI |
MF |
GO:0005509 |
calcium ion binding |
Interacting selectively and non-covalently with calcium ions (Ca2+). |
IEA |
MF |
GO:0005515 |
protein binding |
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
IPI |
MF |
GO:0017166 |
vinculin binding |
Interacting selectively and non-covalently with vinculin, a protein found in muscle, fibroblasts, and epithelial cells that binds actin and appears to mediate attachment of actin filaments to integral proteins of the plasma membrane. |
IDA|IPI |
MF |
GO:0030374 |
ligand-dependent nuclear receptor transcription coactivator activity |
The function of a transcription cofactor that activates transcription in conjuction with a ligand-dependent nuclear receptor from a RNA polymerase II promoter; does not bind DNA itself. |
IDA |
MF |
GO:0042803 |
protein homodimerization activity |
Interacting selectively and non-covalently with an identical protein to form a homodimer. |
IDA |
MF |
GO:0044325 |
ion channel binding |
Interacting selectively and non-covalently with one or more specific sites on an ion channel, a protein complex that spans a membrane and forms a water-filled channel across the phospholipid bilayer allowing selective ion transport down its electrochemical gradient. |
IPI |
MF |
GO:0051015 |
actin filament binding |
Interacting selectively and non-covalently with an actin filament, also known as F-actin, a helical filamentous polymer of globular G-actin subunits. |
IDA |
Domain ID | Description |
---|---|
IPR001589 |
Actinin-type actin-binding domain, conserved site |
IPR001715 |
Calponin homology domain |
IPR002017 |
Spectrin repeat |
IPR002048 |
EF-hand domain |
IPR011992 |
EF-hand domain pair |
IPR014837 |
EF-hand, Ca insensitive |
IPR018159 |
Spectrin/alpha-actinin |
IPR018247 |
EF-Hand 1, calcium-binding site |
IPR026921 |
Alpha-actinin 1 |
Pathway ID | Pathway Term | Pathway Source |
---|---|---|
hsa04510 |
Focal adhesion |
KEGG |
hsa04520 |
Adherens junction |
KEGG |
hsa04530 |
Tight junction |
KEGG |
hsa04670 |
Leukocyte transendothelial migration |
KEGG |
hsa04810 |
Regulation of actin cytoskeleton |
KEGG |
hsa05146 |
Amoebiasis |
KEGG |
hsa05203 |
Viral carcinogenesis |
KEGG |
hsa05322 |
Systemic lupus erythematosus |
KEGG |
WP306 |
Focal Adhesion |
WikiPathways |
WP2118 |
Arrhythmogenic Right Ventricular Cardiomyopathy |
WikiPathways |
WP51 |
Regulation of Actin Cytoskeleton |
WikiPathways |
h_cell2cellPathway |
Cell to Cell Adhesion Signaling |
BioCarta |
h_integrinPathway |
Integrin Signaling Pathway |
BioCarta |
h_ucalpainPathway |
uCalpain and friends in Cell spread |
BioCarta |
Tissue | Cell Type |
---|---|
adrenal gland |
glandular cells |
appendix |
glandular cells |
appendix |
lymphoid tissue |
breast |
glandular cells |
breast |
myoepithelial cells |
bronchus |
respiratory epithelial cells |
cerebral cortex |
neuronal cells |
cervix, uterine |
glandular cells |
colon |
glandular cells |
endometrium |
cells in endometrial stroma |
endometrium |
glandular cells |
epididymis |
glandular cells |
fallopian tube |
glandular cells |
gallbladder |
glandular cells |
hippocampus |
neuronal cells |
kidney |
cells in glomeruli |
lung |
macrophages |
lymph node |
non-germinal center cells |
nasopharynx |
respiratory epithelial cells |
pancreas |
exocrine glandular cells |
pancreas |
islets of Langerhans |
placenta |
decidual cells |
placenta |
trophoblastic cells |
prostate |
glandular cells |
rectum |
glandular cells |
salivary gland |
glandular cells |
seminal vesicle |
glandular cells |
skin |
epidermal cells |
small intestine |
glandular cells |
spleen |
cells in red pulp |
stomach |
glandular cells |
thyroid gland |
glandular cells |
tonsil |
non-germinal center cells |
tonsil |
squamous epithelial cells |
urinary bladder |
urothelial cells |
Pubmed ID | Author | Year | Title |
---|---|---|---|
12734205 |
Wood et al. |
2003 |
The Molecular Phenotype of Polycystic Ovary Syndrome (PCOS) Theca Cells and New Candidate PCOS Genes Defined by Microarray Analysis |
22617121 |
Ouandaogo et al. |
2012 |
Differences in transcriptomic profiles of human cumulus cells isolated from oocytes at GV, MI and MII stages after in vivo andin vitro oocyte maturation |
22951915 |
Haozi et al. |
2012 |
Altered gene expression profile in cumulus cells of mature MII oocytes from patients with polycystic ovary syndrome |
Gene Symbol | Entrez ID | Uniprot ID | Score |
---|---|---|---|
EGF |
1950 |
P01133 |
0.00 |
FYN |
2534 |
P06241 |
0.00 |
ITGA2 |
3673 |
P17301 |
0.00 |
ITGA2B |
3674 |
P08514 |
0.00 |
ITGA3 |
3675 |
P26006 |
0.00 |
ITGA4 |
3676 |
P13612 |
0.00 |
ITGA7 |
3679 |
Q13683 |
0.00 |
ITGA9 |
3680 |
Q13797 |
0.00 |
ITGAV |
3685 |
P06756 |
0.00 |
ITGB3 |
3690 |
P05106 |
0.00 |
ITGB4 |
3691 |
P16144 |
0.00 |
ITGB5 |
3693 |
P18084 |
0.00 |
SPTAN1 |
6709 |
Q13813 |
0.00 |
YES1 |
7525 |
P07947 |
0.00 |
PIP5K1B |
8395 |
O14986 |
0.00 |
PIP4K2B |
8396 |
P78356 |
0.00 |
MAGI1 |
9223 |
Q96QZ7 |
0.00 |
ITGA11 |
22801 |
Q9UKX5 |
0.00 |
PIP5K1C |
23396 |
O60331 |
0.00 |
CTNNA3 |
29119 |
Q9UI47 |
0.00 |
CALD1 |
800 |
Q05682 |
0.49 |
CKB |
1152 |
P12277 |
0.49 |
CYC1 |
1537 |
P08574 |
0.49 |
TPM3 |
7170 |
P06753 |
0.49 |
EZR |
7430 |
P15311 |
0.49 |
KDM5C |
8242 |
P41229 |
0.49 |
FAF2 |
23197 |
Q96CS3 |
0.49 |
ECSIT |
51295 |
Q9BQ95 |
0.49 |
VCL |
7414 |
P18206 |
0.52 |
ACTN2 |
88 |
P35609 |
0.56 |
ACTN3 |
89 |
Q08043 |
0.63 |
CD81 |
975 |
P60033 |
0.63 |
FXN |
2395 |
Q16595 |
0.63 |
GTF2H1 |
2965 |
P32780 |
0.63 |
ICAM1 |
3383 |
P05362 |
0.63 |
OAS1 |
4938 |
P00973 |
0.63 |
PSEN1 |
5663 |
P49768 |
0.63 |
RPS27 |
6232 |
P42677 |
0.63 |
ATXN2 |
6311 |
Q99700 |
0.63 |
SRP19 |
6728 |
P09132 |
0.63 |
GFI1B |
8328 |
Q5VTD9 |
0.63 |
NCOA1 |
8648 |
Q15788 |
0.63 |
GIT2 |
9815 |
Q14161 |
0.63 |
EPM2AIP1 |
9852 |
Q7L775 |
0.63 |
STAM2 |
10254 |
O75886 |
0.63 |
SF3A3 |
10946 |
Q12874 |
0.63 |
MICALL2 |
79778 |
Q8IY33 |
0.63 |
IGSF8 |
93185 |
Q969P0 |
0.63 |
KCTD6 |
200845 |
Q8NC69 |
0.63 |
SPERT |
220082 |
Q8NA61 |
0.63 |
DAG1 |
1605 |
Q14118 |
0.73 |
MAGEA11 |
4110 |
P43364 |
0.73 |
XRCC4 |
7518 |
Q13426 |
0.73 |
TUBA1A |
7846 |
Q71U36 |
0.73 |
SORBS2 |
8470 |
O94875 |
0.75 |
CAMK2A |
815 |
Q9UQM7 |
0.76 |
SRC |
6714 |
P12931 |
0.76 |
ACTN4 |
81 |
O43707 |
0.79 |
ADORA2A |
135 |
P29274 |
0.86 |
ACTN1 |
87 |
P12814 |
0.96 |
ACTB |
60 |
P60709 |
0.00 |
ACTG1 |
71 |
P63261 |
0.00 |
MAP1A |
4130 |
P78559 |
0.49 |
MAP1B |
4131 |
P46821 |
0.49 |
MYH2 |
4620 |
Q9UKX2 |
0.49 |
TPM1 |
7168 |
P09493 |
0.49 |
TPM2 |
7169 |
P07951 |
0.49 |
TPM4 |
7171 |
P67936 |
0.49 |
MYH15 |
22989 |
Q9Y2K3 |
0.49 |
ERBB2IP |
55914 |
Q96RT1 |
0.49 |
PTK2 |
5747 |
Q05397 |
0.52 |
PTPN6 |
5777 |
P29350 |
0.52 |
NEBL |
10529 |
O76041 |
0.52 |
PDLIM5 |
10611 |
Q96HC4 |
0.52 |
CLIC5 |
53405 |
Q9NZA1 |
0.52 |
MYOZ3 |
91977 |
Q8TDC0 |
0.52 |
PKD1 |
5310 |
P98161 |
0.55 |
PLD2 |
5338 |
O14939 |
0.55 |
MAP2 |
4133 |
P11137 |
0.56 |
SUN2 |
25777 |
Q9UH99 |
0.56 |
CDK5 |
1020 |
Q00535 |
0.59 |
GRIN2A |
2903 |
Q12879 |
0.62 |
RAVER1 |
125950 |
Q8IY67 |
0.62 |
APC |
324 |
P25054 |
0.63 |
BMI1 |
648 |
P35226 |
0.63 |
CACNA1A |
773 |
O00555 |
0.63 |
CBL |
867 |
P22681 |
0.63 |
CDK2 |
1017 |
P24941 |
0.63 |
CEBPA |
1050 |
P49715 |
0.63 |
EZH2 |
2146 |
Q15910 |
0.63 |
FBP1 |
2203 |
P09467 |
0.63 |
GRB2 |
2885 |
P62993 |
0.63 |
HSPB1 |
3315 |
P04792 |
0.63 |
HSP90AA1 |
3320 |
P07900 |
0.63 |
JUN |
3725 |
P05412 |
0.63 |
KPNA2 |
3838 |
P52292 |
0.63 |
MCM2 |
4171 |
P49736 |
0.63 |
MCM5 |
4174 |
P33992 |
0.63 |
MDM2 |
4193 |
Q00987 |
0.63 |
MAP3K1 |
4214 |
Q13233 |
0.63 |
MTNR1A |
4543 |
P48039 |
0.63 |
MTNR1B |
4544 |
P49286 |
0.63 |
NTRK1 |
4914 |
P04629 |
0.63 |
PSMA1 |
5682 |
P25786 |
0.63 |
ATXN7 |
6314 |
O15265 |
0.63 |
SVIL |
6840 |
O95425 |
0.63 |
TERF1 |
7013 |
P54274 |
0.63 |
TERF2 |
7014 |
Q15554 |
0.63 |
TJP1 |
7082 |
Q07157 |
0.63 |
VCP |
7415 |
P55072 |
0.63 |
CSRP3 |
8048 |
P50461 |
0.63 |
PDHX |
8050 |
O00330 |
0.63 |
COIL |
8161 |
P38432 |
0.63 |
KAT2B |
8850 |
Q92831 |
0.63 |
NUMBL |
9253 |
Q9Y6R0 |
0.63 |
MED14 |
9282 |
O60244 |
0.63 |
ISG15 |
9636 |
P05161 |
0.63 |
KIAA0101 |
9768 |
Q15004 |
0.63 |
CUL7 |
9820 |
Q14999 |
0.63 |
NR1H3 |
10062 |
Q13133 |
0.63 |
UBD |
10537 |
O15205 |
0.63 |
OBSL1 |
23363 |
O75147 |
0.63 |
GABARAPL1 |
23710 |
Q9H0R8 |
0.63 |
TES |
26136 |
Q9UGI8 |
0.63 |
DCAF8 |
50717 |
Q5TAQ9 |
0.63 |
LUZP4 |
51213 |
Q9P127 |
0.63 |
SIRT7 |
51547 |
Q9NRC8 |
0.63 |
SIRT6 |
51548 |
Q8N6T7 |
0.63 |
PIAS4 |
51588 |
Q8N2W9 |
0.63 |
AMBRA1 |
55626 |
Q9C0C7 |
0.63 |
CDAN1 |
146059 |
Q8IWY9 |
0.63 |
CSRP1 |
1465 |
P21291 |
0.66 |
GRIA4 |
2893 |
P48058 |
0.67 |
LPP |
4026 |
Q93052 |
0.67 |
BTK |
695 |
Q06187 |
0.68 |
PLEK |
5341 |
P08567 |
0.68 |
DDN |
23109 |
O94850 |
0.70 |
PTPN1 |
5770 |
P18031 |
0.71 |
CAPZA2 |
830 |
P47755 |
0.72 |
CDH1 |
999 |
P12830 |
0.72 |
CLU |
1191 |
P10909 |
0.72 |
ATF2 |
1386 |
P15336 |
0.72 |
DBN1 |
1627 |
Q16643 |
0.72 |
HSP90AB1 |
3326 |
P08238 |
0.72 |
MYH9 |
4627 |
P35579 |
0.72 |
PHB |
5245 |
P35232 |
0.72 |
PPP1CB |
5500 |
P62140 |
0.72 |
SLC2A4 |
6517 |
P14672 |
0.72 |
IQGAP1 |
8826 |
P46940 |
0.72 |
PDLIM7 |
9260 |
Q9NR12 |
0.72 |
SYNPO |
11346 |
Q8N3V7 |
0.72 |
MAPRE1 |
22919 |
Q15691 |
0.72 |
TRAF3IP1 |
26146 |
Q8TDR0 |
0.72 |
ANLN |
54443 |
Q9NQW6 |
0.72 |
MYO19 |
80179 |
Q96H55 |
0.72 |
HSF5 |
124535 |
Q4G112 |
0.72 |
ESR1 |
2099 |
P03372 |
0.73 |
SUMO2 |
6613 |
P61956 |
0.73 |
ITGB1 |
3688 |
P05556 |
0.75 |
MYOZ2 |
51778 |
Q9NPC6 |
0.76 |
MYOZ1 |
58529 |
Q9NP98 |
0.76 |
SUMO3 |
6612 |
P55854 |
0.79 |
ESR2 |
2100 |
Q92731 |
0.82 |
MYOT |
9499 |
Q9UBF9 |
0.84 |
PALLD |
23022 |
Q8WX93 |
0.84 |
CTNNA1 |
1495 |
P35221 |
0.85 |
SUMO1 |
7341 |
P63165 |
0.85 |
COL17A1 |
1308 |
Q9UMD9 |
0.86 |
PYGB |
5834 |
P11216 |
0.86 |
CDK5R2 |
8941 |
Q13319 |
0.87 |
PKN1 |
5585 |
Q16512 |
0.88 |
ZYX |
7791 |
Q15942 |
0.89 |
TTN |
7273 |
Q8WZ42 |
0.90 |
CDK5R1 |
8851 |
Q15078 |
0.90 |
PDLIM1 |
9124 |
O00151 |
0.90 |
SSX2IP |
117178 |
Q9Y2D8 |
0.90 |
GIPC1 |
10755 |
O14908 |
0.95 |