Gene Symbol | SRSF6 |
Entrez ID | 6431 |
Uniprot ID | Q13247 |
Description | serine/arginine-rich splicing factor 6 |
Chromosomal Location | chr20: 43,457,928-43,464,247 |
Ontology | GO ID | GO Term | Definition | Evidence |
---|---|---|---|---|
BP |
GO:0000380 |
alternative mRNA splicing, via spliceosome |
The process of generating multiple mRNA molecules from a given set of exons by differential use of exons from the primary transcript(s) to form multiple mature mRNAs that vary in their exon composition. |
IDA |
BP |
GO:0000381 |
regulation of alternative mRNA splicing, via spliceosome |
Any process that modulates the frequency, rate or extent of alternative splicing of nuclear mRNAs. |
IDA|IMP |
BP |
GO:0000398 |
mRNA splicing, via spliceosome |
The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced. |
TAS |
BP |
GO:0006369 |
termination of RNA polymerase II transcription |
The process in which the synthesis of an RNA molecule by RNA polymerase II using a DNA template is completed. |
TAS |
BP |
GO:0006376 |
mRNA splice site selection |
Selection of a splice site by components of the assembling spliceosome. |
IMP |
BP |
GO:0006405 |
RNA export from nucleus |
The directed movement of RNA from the nucleus to the cytoplasm. |
TAS |
BP |
GO:0006406 |
mRNA export from nucleus |
The directed movement of mRNA from the nucleus to the cytoplasm. |
TAS |
BP |
GO:0010837 |
regulation of keratinocyte proliferation |
Any process that modulates the rate, frequency or extent of keratinocyte proliferation. Keratinocyte proliferation is the multiplication or reproduction of keratinocytes, resulting in the expansion of a cell population. |
IMP |
BP |
GO:0031124 |
mRNA 3'-end processing |
Any process involved in forming the mature 3' end of an mRNA molecule. |
TAS |
BP |
GO:0032868 |
response to insulin |
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an insulin stimulus. Insulin is a polypeptide hormone produced by the islets of Langerhans of the pancreas in mammals, and by the homologous organs of other organisms. |
IEA |
BP |
GO:0045617 |
negative regulation of keratinocyte differentiation |
Any process that stops, prevents, or reduces the frequency, rate or extent of keratinocyte differentiation. |
IMP |
BP |
GO:0048025 |
negative regulation of mRNA splicing, via spliceosome |
Any process that stops, prevents or reduces the rate or extent of mRNA splicing via a spliceosomal mechanism. |
IDA |
BP |
GO:0060501 |
positive regulation of epithelial cell proliferation involved in lung morphogenesis |
Any process that increases the rate or frequency of epithelial cell proliferation that results in the lung attaining its shape. |
IDA |
BP |
GO:0060548 |
negative regulation of cell death |
Any process that decreases the rate or frequency of cell death. Cell death is the specific activation or halting of processes within a cell so that its vital functions markedly cease, rather than simply deteriorating gradually over time, which culminates in cell death. |
IDA |
BP |
GO:0061041 |
regulation of wound healing |
Any process that modulates the rate, frequency, or extent of the series of events that restore integrity to a damaged tissue, following an injury. |
IMP |
BP |
GO:2000675 |
negative regulation of type B pancreatic cell apoptotic process |
Any process that stops, prevents or reduces the frequency, rate or extent of type B pancreatic cell apoptotic process. |
IEA |
CC |
GO:0005654 |
nucleoplasm |
That part of the nuclear content other than the chromosomes or the nucleolus. |
IDA|TAS |
CC |
GO:0016607 |
nuclear speck |
A discrete extra-nucleolar subnuclear domain, 20-50 in number, in which splicing factors are seen to be localized by immunofluorescence microscopy. |
IDA |
MF |
GO:0000166 |
nucleotide binding |
Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. |
IEA |
MF |
GO:0003723 |
RNA binding |
Interacting selectively and non-covalently with an RNA molecule or a portion thereof. |
IDA |
MF |
GO:0005515 |
protein binding |
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
IPI |
MF |
GO:0036002 |
pre-mRNA binding |
Interacting selectively and non-covalently with pre-messenger RNA (pre-mRNA), an intermediate molecule between DNA and protein that may contain introns and, at least in part, encodes one or more proteins. Introns are removed from pre-mRNA to form a mRNA molecule. |
IDA |
MF |
GO:0044822 |
poly(A) RNA binding |
Interacting non-covalently with a poly(A) RNA, a RNA molecule which has a tail of adenine bases. |
IDA |
Domain ID | Description |
---|---|
IPR000504 |
RNA recognition motif domain |
IPR034511 |
SRSF6, RNA recognition motif 1 |
Pathway ID | Pathway Term | Pathway Source |
---|---|---|
hsa03040 |
Spliceosome |
KEGG |
hsa05168 |
Herpes simplex infection |
KEGG |
WP411 |
mRNA Processing |
WikiPathways |
Tissue | Cell Type |
---|---|
adrenal gland |
glandular cells |
appendix |
glandular cells |
bone marrow |
hematopoietic cells |
breast |
adipocytes |
breast |
glandular cells |
breast |
myoepithelial cells |
bronchus |
respiratory epithelial cells |
caudate |
glial cells |
caudate |
neuronal cells |
cerebellum |
cells in granular layer |
cerebellum |
cells in molecular layer |
cerebellum |
Purkinje cells |
cerebral cortex |
glial cells |
cerebral cortex |
neuronal cells |
cervix, uterine |
glandular cells |
cervix, uterine |
squamous epithelial cells |
colon |
endothelial cells |
colon |
glandular cells |
colon |
peripheral nerve/ganglion |
duodenum |
glandular cells |
endometrium |
glandular cells |
epididymis |
glandular cells |
esophagus |
squamous epithelial cells |
fallopian tube |
glandular cells |
gallbladder |
glandular cells |
heart muscle |
myocytes |
hippocampus |
neuronal cells |
kidney |
cells in glomeruli |
kidney |
cells in tubules |
lung |
pneumocytes |
nasopharynx |
respiratory epithelial cells |
oral mucosa |
squamous epithelial cells |
pancreas |
exocrine glandular cells |
placenta |
decidual cells |
placenta |
trophoblastic cells |
prostate |
glandular cells |
rectum |
glandular cells |
salivary gland |
glandular cells |
seminal vesicle |
glandular cells |
skin |
fibroblasts |
skin |
keratinocytes |
skin |
Langerhans |
skin |
melanocytes |
skin |
epidermal cells |
small intestine |
glandular cells |
soft tissue |
adipocytes |
soft tissue |
chondrocytes |
soft tissue |
fibroblasts |
soft tissue |
peripheral nerve |
stomach |
glandular cells |
testis |
cells in seminiferous ducts |
testis |
Leydig cells |
thyroid gland |
glandular cells |
tonsil |
germinal center cells |
tonsil |
non-germinal center cells |
tonsil |
squamous epithelial cells |
urinary bladder |
urothelial cells |
vagina |
squamous epithelial cells |
Pubmed ID | Author | Year | Title |
---|---|---|---|
22951915 |
Haozi et al. |
2012 |
Altered gene expression profile in cumulus cells of mature MII oocytes from patients with polycystic ovary syndrome |
Gene Symbol | Entrez ID | Uniprot ID | Score |
---|---|---|---|
RBBP4 |
5928 |
Q09028 |
0.49 |
SRSF1 |
6426 |
Q07955 |
0.49 |
ATL3 |
25923 |
Q6DD88 |
0.49 |
TRA2A |
29896 |
Q13595 |
0.49 |
APP |
351 |
P05067 |
0.56 |
RPL24 |
6152 |
P83731 |
0.63 |
LUC7L2 |
51631 |
Q9Y383 |
0.63 |
TOE1 |
114034 |
Q96GM8 |
0.63 |
SRPK1 |
6732 |
Q96SB4 |
0.70 |
TRA2B |
6434 |
P62995 |
0.73 |
RNPS1 |
10921 |
Q15287 |
0.73 |
EWSR1 |
2130 |
Q01844 |
0.49 |
LMNB1 |
4001 |
P20700 |
0.49 |
SRSF3 |
6428 |
P84103 |
0.49 |
SRSF7 |
6432 |
Q16629 |
0.49 |
EIF3I |
8668 |
Q13347 |
0.49 |
SRSF9 |
8683 |
Q13242 |
0.49 |
SRSF10 |
10772 |
O75494 |
0.49 |
SUB1 |
10923 |
P53999 |
0.49 |
CLK1 |
1195 |
P49759 |
0.52 |
BARD1 |
580 |
Q99728 |
0.63 |
ELAVL1 |
1994 |
Q15717 |
0.63 |
ESR1 |
2099 |
P03372 |
0.63 |
HNRNPA1 |
3178 |
P09651 |
0.63 |
JUN |
3725 |
P05412 |
0.63 |
MDM2 |
4193 |
Q00987 |
0.63 |
NTRK1 |
4914 |
P04629 |
0.63 |
SRSF4 |
6429 |
Q08170 |
0.63 |
TP53 |
7157 |
P04637 |
0.63 |
VCAM1 |
7412 |
P19320 |
0.63 |
XPO1 |
7514 |
O14980 |
0.63 |
YWHAE |
7531 |
P62258 |
0.63 |
YWHAG |
7532 |
P61981 |
0.63 |
SF1 |
7536 |
Q15637 |
0.63 |
CNBP |
7555 |
P62633 |
0.63 |
SF3A2 |
8175 |
Q15428 |
0.63 |
RBM10 |
8241 |
P98175 |
0.63 |
CUL2 |
8453 |
Q13617 |
0.63 |
CUL1 |
8454 |
Q13616 |
0.63 |
EED |
8726 |
O75530 |
0.63 |
KIAA0101 |
9768 |
Q15004 |
0.63 |
CUL7 |
9820 |
Q14999 |
0.63 |
PAN2 |
9924 |
Q504Q3 |
0.63 |
SF3B4 |
10262 |
Q15427 |
0.63 |
PPARGC1A |
10891 |
Q9UBK2 |
0.63 |
COPS5 |
10987 |
Q92905 |
0.63 |
SNW1 |
22938 |
Q13573 |
0.63 |
RRP1B |
23076 |
Q14684 |
0.63 |
OBSL1 |
23363 |
O75147 |
0.63 |
TARDBP |
23435 |
Q13148 |
0.63 |
SUZ12 |
23512 |
Q15022 |
0.63 |
LUZP4 |
51213 |
Q9P127 |
0.63 |
DDX41 |
51428 |
Q9UJV9 |
0.63 |
CAND1 |
55832 |
Q86VP6 |
0.63 |
SNIP1 |
79753 |
Q8TAD8 |
0.63 |
SREK1 |
140890 |
Q8WXA9 |
0.63 |
ASB18 |
401036 |
Q6ZVZ8 |
0.63 |
HNRNPD |
3184 |
Q14103 |
0.72 |
MAGOH |
4116 |
P61326 |
0.72 |
EIF4A3 |
9775 |
P38919 |
0.72 |
YWHAQ |
10971 |
P27348 |
0.72 |
SRPK3 |
26576 |
Q9UPE1 |
0.72 |
TERF1 |
7013 |
P54274 |
0.73 |
TERF2 |
7014 |
Q15554 |
0.73 |
SRRM1 |
10250 |
Q8IYB3 |
0.73 |
SRPK2 |
6733 |
P78362 |
0.84 |