Gene Symbol | RPS4Y1 |
Entrez ID | 6192 |
Uniprot ID | P22090 |
Description | ribosomal protein S4, Y-linked 1 |
Chromosomal Location | chrY: 2,841,486-2,932,000 |
Ontology | GO ID | GO Term | Definition | Evidence |
---|---|---|---|---|
BP |
GO:0000184 |
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay |
The nonsense-mediated decay pathway for nuclear-transcribed mRNAs degrades mRNAs in which an amino-acid codon has changed to a nonsense codon; this prevents the translation of such mRNAs into truncated, and potentially harmful, proteins. |
TAS |
BP |
GO:0006364 |
rRNA processing |
Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules. |
TAS |
BP |
GO:0006412 |
translation |
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome. |
IMP |
BP |
GO:0006413 |
translational initiation |
The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA, and an initiation complex that contains the first aminoacyl-tRNA. |
TAS |
BP |
GO:0006614 |
SRP-dependent cotranslational protein targeting to membrane |
The targeting of proteins to a membrane that occurs during translation and is dependent upon two key components, the signal-recognition particle (SRP) and the SRP receptor. SRP is a cytosolic particle that transiently binds to the endoplasmic reticulum (ER) signal sequence in a nascent protein, to the large ribosomal unit, and to the SRP receptor in the ER membrane. |
TAS |
BP |
GO:0007275 |
multicellular organism development |
The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult). |
IMP |
BP |
GO:0019083 |
viral transcription |
The process by which a viral genome, or part of a viral genome, is transcribed within the host cell. |
TAS |
CC |
GO:0005634 |
nucleus |
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. |
IDA |
CC |
GO:0005654 |
nucleoplasm |
That part of the nuclear content other than the chromosomes or the nucleolus. |
TAS |
CC |
GO:0005829 |
cytosol |
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. |
TAS |
CC |
GO:0005844 |
polysome |
A multiribosomal structure representing a linear array of ribosomes held together by messenger RNA. They represent the active complexes in cellular protein synthesis and are able to incorporate amino acids into polypeptides both in vivo and in vitro. |
IDA |
CC |
GO:0016020 |
membrane |
A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
IDA |
CC |
GO:0022627 |
cytosolic small ribosomal subunit |
The small subunit of a ribosome located in the cytosol. |
NAS |
MF |
GO:0003723 |
RNA binding |
Interacting selectively and non-covalently with an RNA molecule or a portion thereof. |
TAS |
MF |
GO:0003735 |
structural constituent of ribosome |
The action of a molecule that contributes to the structural integrity of the ribosome. |
IMP |
MF |
GO:0019843 |
rRNA binding |
Interacting selectively and non-covalently with ribosomal RNA. |
IEA |
Domain ID | Description |
---|---|
IPR000876 |
Ribosomal protein S4e |
IPR002942 |
RNA-binding S4 domain |
IPR005824 |
KOW |
IPR013843 |
Ribosomal protein S4e, N-terminal |
IPR013845 |
Ribosomal protein S4e, central region |
IPR018199 |
Ribosomal protein S4e, N-terminal, conserved site |
IPR032277 |
40S ribosomal protein S4, C-terminal domain |
Pathway ID | Pathway Term | Pathway Source |
---|---|---|
hsa03010 |
Ribosome |
KEGG |
WP477 |
Cytoplasmic Ribosomal Proteins |
WikiPathways |
Tissue | Cell Type |
---|---|
adrenal gland |
glandular cells |
appendix |
glandular cells |
bone marrow |
hematopoietic cells |
bronchus |
respiratory epithelial cells |
cerebellum |
Purkinje cells |
cerebral cortex |
neuronal cells |
colon |
endothelial cells |
colon |
glandular cells |
duodenum |
glandular cells |
endometrium |
glandular cells |
esophagus |
squamous epithelial cells |
lung |
macrophages |
lymph node |
germinal center cells |
nasopharynx |
respiratory epithelial cells |
oral mucosa |
squamous epithelial cells |
pancreas |
exocrine glandular cells |
placenta |
trophoblastic cells |
salivary gland |
glandular cells |
skin |
epidermal cells |
small intestine |
glandular cells |
spleen |
cells in white pulp |
stomach |
glandular cells |
testis |
cells in seminiferous ducts |
testis |
Leydig cells |
tonsil |
germinal center cells |
urinary bladder |
urothelial cells |
Pubmed ID | Author | Year | Title |
---|---|---|---|
15308691 |
Jansen et al. |
2004 |
Abnormal Gene Expression Profiles in Human Ovaries from Polycystic Ovary Syndrome Patients |
Gene Symbol | Entrez ID | Uniprot ID | Score |
---|---|---|---|
RPS4Y2 |
140032 |
Q8TD47 |
0.63 |
CLK1 |
1195 |
P49759 |
0.52 |
CALM2 |
805 |
P62158 |
0.56 |
CALM3 |
808 |
P62158 |
0.56 |
CD81 |
975 |
P60033 |
0.63 |
ESR2 |
2100 |
Q92731 |
0.63 |
HTR7 |
3363 |
P34969 |
0.63 |
ICAM1 |
3383 |
P05362 |
0.63 |
PRPS1 |
5631 |
P60891 |
0.63 |
RNF2 |
6045 |
Q99496 |
0.63 |
SUMO2 |
6613 |
P61956 |
0.63 |
IGSF8 |
93185 |
Q969P0 |
0.63 |
LRRK2 |
120892 |
Q5S007 |
0.63 |