Protein Description

Gene Symbol RPS4Y1
Entrez ID 6192
Uniprot ID P22090
Description ribosomal protein S4, Y-linked 1
Chromosomal Location chrY: 2,841,486-2,932,000
Ontology GO ID GO Term Definition Evidence

BP

GO:0000184

nuclear-transcribed mRNA catabolic process, nonsense-mediated decay

The nonsense-mediated decay pathway for nuclear-transcribed mRNAs degrades mRNAs in which an amino-acid codon has changed to a nonsense codon; this prevents the translation of such mRNAs into truncated, and potentially harmful, proteins.

TAS

BP

GO:0006364

rRNA processing

Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules.

TAS

BP

GO:0006412

translation

The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.

IMP

BP

GO:0006413

translational initiation

The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA, and an initiation complex that contains the first aminoacyl-tRNA.

TAS

BP

GO:0006614

SRP-dependent cotranslational protein targeting to membrane

The targeting of proteins to a membrane that occurs during translation and is dependent upon two key components, the signal-recognition particle (SRP) and the SRP receptor. SRP is a cytosolic particle that transiently binds to the endoplasmic reticulum (ER) signal sequence in a nascent protein, to the large ribosomal unit, and to the SRP receptor in the ER membrane.

TAS

BP

GO:0007275

multicellular organism development

The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult).

IMP

BP

GO:0019083

viral transcription

The process by which a viral genome, or part of a viral genome, is transcribed within the host cell.

TAS

CC

GO:0005634

nucleus

A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

IDA

CC

GO:0005654

nucleoplasm

That part of the nuclear content other than the chromosomes or the nucleolus.

TAS

CC

GO:0005829

cytosol

The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.

TAS

CC

GO:0005844

polysome

A multiribosomal structure representing a linear array of ribosomes held together by messenger RNA. They represent the active complexes in cellular protein synthesis and are able to incorporate amino acids into polypeptides both in vivo and in vitro.

IDA

CC

GO:0016020

membrane

A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

IDA

CC

GO:0022627

cytosolic small ribosomal subunit

The small subunit of a ribosome located in the cytosol.

NAS

MF

GO:0003723

RNA binding

Interacting selectively and non-covalently with an RNA molecule or a portion thereof.

TAS

MF

GO:0003735

structural constituent of ribosome

The action of a molecule that contributes to the structural integrity of the ribosome.

IMP

MF

GO:0019843

rRNA binding

Interacting selectively and non-covalently with ribosomal RNA.

IEA

Domain ID Description

IPR000876

Ribosomal protein S4e

IPR002942

RNA-binding S4 domain

IPR005824

KOW

IPR013843

Ribosomal protein S4e, N-terminal

IPR013845

Ribosomal protein S4e, central region

IPR018199

Ribosomal protein S4e, N-terminal, conserved site

IPR032277

40S ribosomal protein S4, C-terminal domain

Pathway ID Pathway Term Pathway Source

hsa03010

Ribosome

KEGG

WP477

Cytoplasmic Ribosomal Proteins

WikiPathways

No diseases found.

Tissue Cell Type

adrenal gland

glandular cells

appendix

glandular cells

bone marrow

hematopoietic cells

bronchus

respiratory epithelial cells

cerebellum

Purkinje cells

cerebral cortex

neuronal cells

colon

endothelial cells

colon

glandular cells

duodenum

glandular cells

endometrium

glandular cells

esophagus

squamous epithelial cells

lung

macrophages

lymph node

germinal center cells

nasopharynx

respiratory epithelial cells

oral mucosa

squamous epithelial cells

pancreas

exocrine glandular cells

placenta

trophoblastic cells

salivary gland

glandular cells

skin

epidermal cells

small intestine

glandular cells

spleen

cells in white pulp

stomach

glandular cells

testis

cells in seminiferous ducts

testis

Leydig cells

tonsil

germinal center cells

urinary bladder

urothelial cells

No databases found.

Pubmed ID Author Year Title

15308691

Jansen et al.

2004

Abnormal Gene Expression Profiles in Human Ovaries from Polycystic Ovary Syndrome Patients

Gene Symbol Entrez ID Uniprot ID Score

RPS4Y2

140032

Q8TD47

0.63

CLK1

1195

P49759

0.52

CALM2

805

P62158

0.56

CALM3

808

P62158

0.56

CD81

975

P60033

0.63

ESR2

2100

Q92731

0.63

HTR7

3363

P34969

0.63

ICAM1

3383

P05362

0.63

PRPS1

5631

P60891

0.63

RNF2

6045

Q99496

0.63

SUMO2

6613

P61956

0.63

IGSF8

93185

Q969P0

0.63

LRRK2

120892

Q5S007

0.63