Protein Description

Gene Symbol RAP1A
Entrez ID 5906
Uniprot ID P62834
Description RAP1A, member of RAS oncogene family
Chromosomal Location chr1: 111,542,218-111,716,691
Ontology GO ID GO Term Definition Evidence

BP

GO:0000186

activation of MAPKK activity

The initiation of the activity of the inactive enzyme MAP kinase kinase (MAPKK).

TAS

BP

GO:0007165

signal transduction

The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.

TAS

BP

GO:0010976

positive regulation of neuron projection development

Any process that increases the rate, frequency or extent of neuron projection development. Neuron projection development is the process whose specific outcome is the progression of a neuron projection over time, from its formation to the mature structure. A neuron projection is any process extending from a neural cell, such as axons or dendrites (collectively called neurites).

ISS

BP

GO:0015031

protein transport

The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.

IDA

BP

GO:0032486

Rap protein signal transduction

A series of molecular signals within the cell that are mediated by a member of the Rap family of proteins switching to a GTP-bound active state.

IMP

BP

GO:0032966

negative regulation of collagen biosynthetic process

Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of collagen, any of a group of fibrous proteins of very high tensile strength that form the main component of connective tissue in animals.

IEA

BP

GO:0035690

cellular response to drug

Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease.

IEA

BP

GO:0038180

nerve growth factor signaling pathway

A series of molecular signals initiated by the binding of nerve growth factor (NGF) to a receptor on the surface of the target cell, and ending with regulation of a downstream cellular process, e.g. transcription.

ISS

BP

GO:0043547

positive regulation of GTPase activity

Any process that activates or increases the activity of a GTPase.

ISS

BP

GO:0045860

positive regulation of protein kinase activity

Any process that activates or increases the frequency, rate or extent of protein kinase activity.

ISS

BP

GO:0046326

positive regulation of glucose import

Any process that activates or increases the frequency, rate or extent of the import of the hexose monosaccharide glucose into a cell or organelle.

IEA

BP

GO:0050766

positive regulation of phagocytosis

Any process that activates or increases the frequency, rate or extent of phagocytosis.

IEA

BP

GO:0050796

regulation of insulin secretion

Any process that modulates the frequency, rate or extent of the regulated release of insulin.

TAS

BP

GO:0061028

establishment of endothelial barrier

The establishment of a barrier between endothelial cell layers, such as those in the brain, lung or intestine, to exert specific and selective control over the passage of water and solutes, thus allowing formation and maintenance of compartments that differ in fluid and solute composition.

IMP

BP

GO:0070374

positive regulation of ERK1 and ERK2 cascade

Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the ERK1 and ERK2 cascade.

ISS

BP

GO:0071320

cellular response to cAMP

Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) stimulus.

IDA

BP

GO:0071333

cellular response to glucose stimulus

Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucose stimulus.

IEA

BP

GO:0097327

response to antineoplastic agent

Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an antineoplastic agent stimulus. An antineoplastic agent is a substance that inhibits or prevents the proliferation of neoplasms.

IEA

BP

GO:0097421

liver regeneration

The regrowth of lost or destroyed liver.

IEA

BP

GO:1901888

regulation of cell junction assembly

Any process that modulates the frequency, rate or extent of cell junction assembly.

IMP

BP

GO:1990090

cellular response to nerve growth factor stimulus

A process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nerve growth factor stimulus.

ISS

BP

GO:2000301

negative regulation of synaptic vesicle exocytosis

Any process that stops, prevents or reduces the frequency, rate or extent of synaptic vesicle exocytosis.

IEA

BP

GO:2001214

positive regulation of vasculogenesis

Any process that activates or increases the frequency, rate or extent of vasculogenesis.

ISS

CC

GO:0005737

cytoplasm

All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

IDA

CC

GO:0005769

early endosome

A membrane-bounded organelle that receives incoming material from primary endocytic vesicles that have been generated by clathrin-dependent and clathrin-independent endocytosis; vesicles fuse with the early endosome to deliver cargo for sorting into recycling or degradation pathways.

ISS

CC

GO:0005770

late endosome

A prelysosomal endocytic organelle differentiated from early endosomes by lower lumenal pH and different protein composition. Late endosomes are more spherical than early endosomes and are mostly juxtanuclear, being concentrated near the microtubule organizing center.

ISS

CC

GO:0005829

cytosol

The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.

TAS

CC

GO:0005886

plasma membrane

The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

TAS

CC

GO:0030054

cell junction

A cellular component that forms a specialized region of connection between two or more cells or between a cell and the extracellular matrix. At a cell junction, anchoring proteins extend through the plasma membrane to link cytoskeletal proteins in one cell to cytoskeletal proteins in neighboring cells or to proteins in the extracellular matrix.

ISS

CC

GO:0032045

guanyl-nucleotide exchange factor complex

A protein complex that stimulates the exchange of guanyl nucleotides associated with a GTPase.

IEA

CC

GO:0043005

neuron projection

A prolongation or process extending from a nerve cell, e.g. an axon or dendrite.

IEA

CC

GO:0043209

myelin sheath

An electrically insulating fatty layer that surrounds the axons of many neurons. It is an outgrowth of glial cells: Schwann cells supply the myelin for peripheral neurons while oligodendrocytes supply it to those of the central nervous system.

IEA

CC

GO:0048471

perinuclear region of cytoplasm

Cytoplasm situated near, or occurring around, the nucleus.

IDA

CC

GO:0070062

extracellular exosome

A membrane-bounded vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.

IDA

MF

GO:0003924

GTPase activity

Catalysis of the reaction: GTP + H2O = GDP + phosphate.

IEA

MF

GO:0005515

protein binding

Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

IPI

MF

GO:0005525

GTP binding

Interacting selectively and non-covalently with GTP, guanosine triphosphate.

IEA

MF

GO:0008565

protein transporter activity

Enables the directed movement of proteins into, out of or within a cell, or between cells.

IDA

MF

GO:0017016

Ras GTPase binding

Interacting selectively and non-covalently with any member of the Ras superfamily of monomeric GTPases.

IEA

MF

GO:0017034

Rap guanyl-nucleotide exchange factor activity

Stimulates the exchange of guanyl nucleotides associated with a GTPase of the Rap family. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase.

ISS

MF

GO:0032403

protein complex binding

Interacting selectively and non-covalently with any protein complex (a complex of two or more proteins that may include other nonprotein molecules).

IDA

Domain ID Description

IPR001806

Small GTPase superfamily

IPR005225

Small GTP-binding protein domain

IPR020849

Small GTPase superfamily, Ras type

IPR027417

P-loop containing nucleoside triphosphate hydrolase

Pathway ID Pathway Term Pathway Source

hsa04010

MAPK signaling pathway

KEGG

hsa04014

Ras signaling pathway

KEGG

hsa04015

Rap1 signaling pathway

KEGG

hsa04024

cAMP signaling pathway

KEGG

hsa04062

Chemokine signaling pathway

KEGG

hsa04510

Focal adhesion

KEGG

hsa04530

Tight junction

KEGG

hsa04611

Platelet activation

KEGG

hsa04670

Leukocyte transendothelial migration

KEGG

hsa04720

Long-term potentiation

KEGG

hsa04722

Neurotrophin signaling pathway

KEGG

hsa04972

Pancreatic secretion

KEGG

hsa05211

Renal cell carcinoma

KEGG

WP437

EGF/EGFR Signaling Pathway

WikiPathways

WP734

Serotonin Receptor 4/6/7 and NR3C Signaling

WikiPathways

WP1984

Integrated Breast Cancer Pathway

WikiPathways

WP313

Signaling of Hepatocyte Growth Factor Receptor

WikiPathways

WP3929

Chemokine signaling pathway

WikiPathways

WP306

Focal Adhesion

WikiPathways

WP585

Interferon type I signaling pathways

WikiPathways

WP185

Integrin-mediated Cell Adhesion

WikiPathways

WP382

MAPK Signaling Pathway

WikiPathways

WP2636

Common Pathways Underlying Drug Addiction

WikiPathways

WP2032

Human Thyroid Stimulating Hormone (TSH) signaling pathway

WikiPathways

WP2380

Brain-Derived Neurotrophic Factor (BDNF) signaling pathway

WikiPathways

WP3888

VEGFA-VEGFR2 Signaling Pathway

WikiPathways

h_integrinPathway

Integrin Signaling Pathway

BioCarta

h_metPathway

Signaling of Hepatocyte Growth Factor Receptor

BioCarta

UMLS CUI UMLS Term

C0029456

Osteoporosis

No tissues found.

No databases found.

Pubmed ID Author Year Title

17148555

Wood et al.

2007

Molecular Abnormalities in Oocytes from Women with Polycystic Ovary Syndrome Revealed by Microarray Analysis

Gene Symbol Entrez ID Uniprot ID Score

ARHGDIA

396

P52565

0.49

ECHS1

1892

P30084

0.49

RAB8A

4218

P61006

0.49

RAB5A

5868

P20339

0.49

RAB5B

5869

P61020

0.49

RAB5C

5878

P51148

0.49

UQCRC2

7385

P22695

0.49

RAB7A

7879

P51149

0.49

RAB8B

51762

Q92930

0.49

RASA1

5921

P20936

0.52

SMARCA4

6597

P51532

0.52

RASGRP2

10235

Q7LDG7

0.55

HSPA4

3308

P34932

0.56

SMARCA2

6595

P51531

0.56

BIN1

274

O00499

0.59

BMX

660

P51813

0.59

HDAC1

3065

Q13547

0.59

TCEB3

6924

Q14241

0.59

FADD

8772

Q13158

0.59

TNFRSF10C

8794

O14798

0.59

FAF1

11124

Q9UNN5

0.59

RAP1A

5906

P62834

0.62

GANAB

23193

Q14697

0.63

YWHAZ

7534

P63104

0.72

RUNDC3A

10900

Q59EK9

0.75

TSC2

7249

P49815

0.84

RASSF5

83593

Q8WWW0

0.84

MLLT4

4301

P55196

0.88

RAF1

5894

P04049

0.90

CDK11B

984

P21127

0.49

FEN1

2237

P39748

0.49

ILF3

3609

Q12906

0.49

HNRNPM

4670

P52272

0.49

PON2

5445

Q15165

0.49

RAB1A

5861

P62820

0.49

DNAJC8

22826

O75937

0.49

GNG12

55970

Q9UBI6

0.49

HSPA1A

3303

P0DMV8

0.52

HSPA1B

3304

P0DMV9

0.52

RASA3

22821

Q14644

0.52

PRKACA

5566

P17612

0.55

BRAF

673

P15056

0.56

CDC42

998

P60953

0.59

KRIT1

889

O00522

0.63

ELAVL1

1994

Q15717

0.63

ESR1

2099

P03372

0.63

MTOR

2475

P42345

0.63

GJA1

2697

P17302

0.63

GNB1

2782

P62873

0.63

MDM2

4193

Q00987

0.63

RALA

5898

P11233

0.63

TRAF6

7189

Q9Y4K3

0.63

VHL

7428

P40337

0.63

DGKI

9162

O75912

0.63

SIRT1

23411

Q96EB6

0.63

FTSJ1

24140

Q9UET6

0.63

RADIL

55698

Q96JH8

0.63

UNK

85451

Q9C0B0

0.63

GRDX

117189

N/A

0.63

RAP1GAP

5909

P47736

0.65

ARHGEF1

9138

Q92888

0.65

RAPGEF3

10411

O95398

0.65

RAPGEF4

11069

Q8WZA2

0.65

GABARAPL2

11345

P60520

0.65

RASIP1

54922

Q5U651

0.65

RASGRP4

115727

Q8TDF6

0.65

APBB1IP

54518

Q7Z5R6

0.67

FAS

355

P25445

0.71

RHEB

6009

Q15382

0.72

IQGAP1

8826

P46940

0.72

LIMA1

51474

Q9UHB6

0.72

NTRK1

4914

P04629

0.73

PPP2R1A

5518

P30153

0.73

RGL4

266747

Q8IZJ4

0.75

PDE6D

5147

O43924

0.76

RAPGEF5

9771

Q92565

0.77

RABAC1

10567

Q9UI14

0.77

RAPGEF6

51735

Q8TEU7

0.79

MTNR1A

4543

P48039

0.83

RAP1GDS1

5910

P52306

0.83

RGS14

10636

O43566

0.87

RALGDS

5900

Q12967

0.89

RAPGEF2

9693

Q9Y4G8

0.89