Gene Symbol | PLOD1 |
Entrez ID | 5351 |
Uniprot ID | Q02809 |
Description | procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1 |
Chromosomal Location | chr1: 11,934,205-11,975,538 |
Ontology | GO ID | GO Term | Definition | Evidence |
---|---|---|---|---|
BP |
GO:0001666 |
response to hypoxia |
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level. |
IEP |
BP |
GO:0006464 |
cellular protein modification process |
The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications) occurring at the level of an individual cell. Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification). |
NAS |
BP |
GO:0008544 |
epidermis development |
The process whose specific outcome is the progression of the epidermis over time, from its formation to the mature structure. The epidermis is the outer epithelial layer of an animal, it may be a single layer that produces an extracellular material (e.g. the cuticle of arthropods) or a complex stratified squamous epithelium, as in the case of many vertebrate species. |
IMP|TAS |
BP |
GO:0046947 |
hydroxylysine biosynthetic process |
The chemical reactions and pathways resulting in the formation of hydroxylysine (5-hydroxy-2,6-diaminohexanoic acid), a chiral alpha-amino acid. |
TAS |
BP |
GO:0055114 |
oxidation-reduction process |
A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
TAS |
CC |
GO:0005789 |
endoplasmic reticulum membrane |
The lipid bilayer surrounding the endoplasmic reticulum. |
TAS |
CC |
GO:0030867 |
rough endoplasmic reticulum membrane |
The lipid bilayer surrounding the rough endoplasmic reticulum. |
IEA |
CC |
GO:0070062 |
extracellular exosome |
A membrane-bounded vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm. |
IDA |
MF |
GO:0005506 |
iron ion binding |
Interacting selectively and non-covalently with iron (Fe) ions. |
IEA |
MF |
GO:0008475 |
procollagen-lysine 5-dioxygenase activity |
Catalysis of the reaction: procollagen L-lysine + 2-oxoglutarate + O2 = procollagen 5-hydroxy-L-lysine + succinate + CO2. |
TAS |
MF |
GO:0031418 |
L-ascorbic acid binding |
Interacting selectively and non-covalently with L-ascorbic acid, (2R)-2-[(1S)-1,2-dihydroxyethyl]-4-hydroxy-5-oxo-2,5-dihydrofuran-3-olate; L-ascorbic acid is vitamin C and has co-factor and anti-oxidant activities in many species. |
IEA |
MF |
GO:0042803 |
protein homodimerization activity |
Interacting selectively and non-covalently with an identical protein to form a homodimer. |
TAS |
Domain ID | Description |
---|---|
IPR001006 |
Procollagen-lysine 5-dioxygenase |
IPR005123 |
Oxoglutarate/iron-dependent dioxygenase |
IPR006620 |
Prolyl 4-hydroxylase, alpha subunit |
IPR029044 |
Nucleotide-diphospho-sugar transferases |
Pathway ID | Pathway Term | Pathway Source |
---|---|---|
hsa00310 |
Lysine degradation |
KEGG |
UMLS CUI | UMLS Term |
---|---|
C0022821 |
Kyphosis Deformity Of Spine |
Tissue | Cell Type |
---|---|
colon |
glandular cells |
endometrium |
glandular cells |
epididymis |
glandular cells |
placenta |
decidual cells |
rectum |
glandular cells |
stomach |
glandular cells |
Pubmed ID | Author | Year | Title |
---|---|---|---|
22951915 |
Haozi et al. |
2012 |
Altered gene expression profile in cumulus cells of mature MII oocytes from patients with polycystic ovary syndrome |
Gene Symbol | Entrez ID | Uniprot ID | Score |
---|---|---|---|
POR |
5447 |
P16435 |
0.49 |
NCDN |
23154 |
Q9UBB6 |
0.63 |
PLOD1 |
5351 |
Q02809 |
0.75 |
HNRNPH2 |
3188 |
P55795 |
0.82 |
RNF169 |
254225 |
Q8NCN4 |
0.07 |
DDX1 |
1653 |
Q92499 |
0.49 |
OFD1 |
8481 |
O75665 |
0.49 |
NAE1 |
8883 |
Q13564 |
0.49 |
TJP2 |
9414 |
Q9UDY2 |
0.49 |
RPGRIP1L |
23322 |
Q68CZ1 |
0.49 |
TCTN3 |
26123 |
Q6NUS6 |
0.49 |
TCTN1 |
79600 |
Q2MV58 |
0.49 |
COLGALT1 |
79709 |
Q8NBJ5 |
0.49 |
CDCA3 |
83461 |
Q99618 |
0.49 |
HNRNPA1 |
3178 |
P09651 |
0.63 |
NEDD8 |
4738 |
Q15843 |
0.63 |
NTRK1 |
4914 |
P04629 |
0.63 |
SUMO2 |
6613 |
P61956 |
0.63 |
TERF1 |
7013 |
P54274 |
0.63 |
TERF2 |
7014 |
Q15554 |
0.63 |
SUMO1 |
7341 |
P63165 |
0.63 |
USP4 |
7375 |
Q13107 |
0.63 |
CUL5 |
8065 |
Q93034 |
0.63 |
CUL4B |
8450 |
Q13620 |
0.63 |
CUL3 |
8452 |
Q13618 |
0.63 |
CUL2 |
8453 |
Q13617 |
0.63 |
CUL1 |
8454 |
Q13616 |
0.63 |
ISG15 |
9636 |
P05161 |
0.63 |
KIAA0101 |
9768 |
Q15004 |
0.63 |
COPS5 |
10987 |
Q92905 |
0.63 |
GABARAP |
11337 |
O95166 |
0.63 |
GABARAPL2 |
11345 |
P60520 |
0.63 |
OBSL1 |
23363 |
O75147 |
0.63 |
GABARAPL1 |
23710 |
Q9H0R8 |
0.63 |
GEMIN5 |
25929 |
Q8TEQ6 |
0.63 |
FBXO6 |
26270 |
Q9NRD1 |
0.63 |
LATS2 |
26524 |
Q9NRM7 |
0.63 |
SIRT7 |
51547 |
Q9NRC8 |
0.63 |
DCUN1D1 |
54165 |
Q96GG9 |
0.63 |
CAND1 |
55832 |
Q86VP6 |
0.63 |
MAP1LC3A |
84557 |
Q9H492 |
0.63 |
PDIA3 |
2923 |
P30101 |
0.72 |
H2AFX |
3014 |
P16104 |
0.72 |
MAP3K3 |
4215 |
Q99759 |
0.72 |