Gene Symbol | PDGFA |
Entrez ID | 5154 |
Uniprot ID | P04085 |
Description | platelet-derived growth factor alpha polypeptide |
Chromosomal Location | chr7: 497,258-520,296 |
Ontology | GO ID | GO Term | Definition | Evidence |
---|---|---|---|---|
BP |
GO:0000165 |
MAPK cascade |
An intracellular protein kinase cascade containing at least a MAPK, a MAPKK and a MAP3K. The cascade can also contain two additional tiers: the upstream MAP4K and the downstream MAP Kinase-activated kinase (MAPKAPK). The kinases in each tier phosphorylate and activate the kinases in the downstream tier to transmit a signal within a cell. |
TAS |
BP |
GO:0001525 |
angiogenesis |
Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels. |
ISS |
BP |
GO:0001775 |
cell activation |
A change in the morphology or behavior of a cell resulting from exposure to an activating factor such as a cellular or soluble ligand. |
TAS |
BP |
GO:0001942 |
hair follicle development |
The process whose specific outcome is the progression of the hair follicle over time, from its formation to the mature structure. A hair follicle is a tube-like opening in the epidermis where the hair shaft develops and into which the sebaceous glands open. |
ISS |
BP |
GO:0002053 |
positive regulation of mesenchymal cell proliferation |
The process of activating or increasing the rate or extent of mesenchymal cell proliferation. Mesenchymal cells are loosely organized embryonic cells. |
ISS |
BP |
GO:0002576 |
platelet degranulation |
The regulated exocytosis of secretory granules containing preformed mediators such as histamine and serotonin by a platelet. |
TAS |
BP |
GO:0007267 |
cell-cell signaling |
Any process that mediates the transfer of information from one cell to another. This process includes signal transduction in the receiving cell and, where applicable, release of a ligand and any processes that actively facilitate its transport and presentation to the receiving cell. Examples include signaling via soluble ligands, via cell adhesion molecules and via gap junctions. |
TAS |
BP |
GO:0008284 |
positive regulation of cell proliferation |
Any process that activates or increases the rate or extent of cell proliferation. |
IDA |
BP |
GO:0009611 |
response to wounding |
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism. |
IDA |
BP |
GO:0009887 |
animal organ morphogenesis |
Morphogenesis of an animal organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process in which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions. |
ISS |
BP |
GO:0010512 |
negative regulation of phosphatidylinositol biosynthetic process |
Any process that decreases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of phosphatidylinositol. |
IDA |
BP |
GO:0010544 |
negative regulation of platelet activation |
Any process that decreases the rate or frequency of platelet activation. Platelet activation is a series of progressive, overlapping events triggered by exposure of the platelets to subendothelial tissue. |
IDA |
BP |
GO:0014066 |
regulation of phosphatidylinositol 3-kinase signaling |
Any process that modulates the frequency, rate or extent of signal transduction mediated by the phosphatidylinositol 3-kinase cascade. |
TAS |
BP |
GO:0014068 |
positive regulation of phosphatidylinositol 3-kinase signaling |
Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the phosphatidylinositol 3-kinase cascade. |
IDA |
BP |
GO:0014910 |
regulation of smooth muscle cell migration |
Any process that modulates the frequency, rate or extent of smooth muscle cell migration. |
IDA |
BP |
GO:0030031 |
cell projection assembly |
Formation of a prolongation or process extending from a cell, e.g. a flagellum or axon. |
ISS |
BP |
GO:0030036 |
actin cytoskeleton organization |
A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins. |
ISS |
BP |
GO:0030198 |
extracellular matrix organization |
A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of an extracellular matrix. |
TAS |
BP |
GO:0030335 |
positive regulation of cell migration |
Any process that activates or increases the frequency, rate or extent of cell migration. |
IDA |
BP |
GO:0031954 |
positive regulation of protein autophosphorylation |
Any process that activates or increases the frequency, rate or extent of the phosphorylation by a protein of one or more of its own residues. |
IDA |
BP |
GO:0032956 |
regulation of actin cytoskeleton organization |
Any process that modulates the frequency, rate or extent of the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins. |
TAS |
BP |
GO:0035793 |
positive regulation of metanephric mesenchymal cell migration by platelet-derived growth factor receptor-beta signaling pathway |
Any process that increases the frequency, rate or extent of metanephric mesenchymal cell migration as a result of the series of molecular signals generated as a consequence of a platelet-derived growth factor receptor-beta binding to one of its physiological ligands. |
IDA |
BP |
GO:0042060 |
wound healing |
The series of events that restore integrity to a damaged tissue, following an injury. |
TAS |
BP |
GO:0043406 |
positive regulation of MAP kinase activity |
Any process that activates or increases the frequency, rate or extent of MAP kinase activity. |
IDA |
BP |
GO:0043410 |
positive regulation of MAPK cascade |
Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the MAPK cascade. |
IMP |
BP |
GO:0043547 |
positive regulation of GTPase activity |
Any process that activates or increases the activity of a GTPase. |
IEA |
BP |
GO:0043588 |
skin development |
The process whose specific outcome is the progression of the skin over time, from its formation to the mature structure. The skin is the external membranous integument of an animal. In vertebrates the skin generally consists of two layers, an outer nonsensitive and nonvascular epidermis (cuticle or skarfskin) composed of cells which are constantly growing and multiplying in the deeper, and being thrown off in the superficial layers, as well as an inner vascular dermis (cutis, corium or true skin) composed mostly of connective tissue. |
ISS |
BP |
GO:0045740 |
positive regulation of DNA replication |
Any process that activates or increases the frequency, rate or extent of DNA replication. |
IDA |
BP |
GO:0046854 |
phosphatidylinositol phosphorylation |
The process of introducing one or more phosphate groups into a phosphatidylinositol, any glycerophosphoinositol having one phosphatidyl group esterified to one of the hydroxy groups of inositol. |
IEA |
BP |
GO:0048008 |
platelet-derived growth factor receptor signaling pathway |
The series of molecular signals generated as a consequence of a platelet-derived growth factor receptor binding to one of its physiological ligands. |
IDA |
BP |
GO:0048015 |
phosphatidylinositol-mediated signaling |
A series of molecular signals in which a cell uses a phosphatidylinositol-mediated signaling to convert a signal into a response. Phosphatidylinositols include phosphatidylinositol (PtdIns) and its phosphorylated derivatives. |
TAS |
BP |
GO:0048146 |
positive regulation of fibroblast proliferation |
Any process that activates or increases the frequency, rate or extent of multiplication or reproduction of fibroblast cells. |
IDA |
BP |
GO:0048286 |
lung alveolus development |
The process whose specific outcome is the progression of the alveolus over time, from its formation to the mature structure. The alveolus is a sac for holding air in the lungs; formed by the terminal dilation of air passageways. |
ISS |
BP |
GO:0050730 |
regulation of peptidyl-tyrosine phosphorylation |
Any process that modulates the frequency, rate or extent of the phosphorylation of peptidyl-tyrosine. |
ISS |
BP |
GO:0050919 |
negative chemotaxis |
The directed movement of a motile cell or organism towards a lower concentration of a chemical. |
IDA |
BP |
GO:0051781 |
positive regulation of cell division |
Any process that activates or increases the frequency, rate or extent of cell division. |
IEA |
BP |
GO:0051897 |
positive regulation of protein kinase B signaling |
Any process that activates or increases the frequency, rate or extent of protein kinase B signaling, a series of reactions mediated by the intracellular serine/threonine kinase protein kinase B. |
IDA |
BP |
GO:0060683 |
regulation of branching involved in salivary gland morphogenesis by epithelial-mesenchymal signaling |
Any process that modulates the rate, frequency, or extent of salivary gland branching as a result of the transfer of information from the epithelial cells to the mesenchymal cells of the salivary gland. |
ISS |
BP |
GO:0070374 |
positive regulation of ERK1 and ERK2 cascade |
Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the ERK1 and ERK2 cascade. |
IDA |
BP |
GO:1990401 |
embryonic lung development |
The process occurring during the embryonic phase whose specific outcome is the progression of the lung over time, from its formation to the mature structure. |
ISS |
CC |
GO:0000139 |
Golgi membrane |
The lipid bilayer surrounding any of the compartments of the Golgi apparatus. |
TAS |
CC |
GO:0005576 |
extracellular region |
The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. |
TAS |
CC |
GO:0005615 |
extracellular space |
That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid. |
IDA |
CC |
GO:0005788 |
endoplasmic reticulum lumen |
The volume enclosed by the membranes of the endoplasmic reticulum. |
TAS |
CC |
GO:0005902 |
microvillus |
Thin cylindrical membrane-covered projections on the surface of an animal cell containing a core bundle of actin filaments. Present in especially large numbers on the absorptive surface of intestinal cells. |
ISS |
CC |
GO:0009986 |
cell surface |
The external part of the cell wall and/or plasma membrane. |
IDA |
CC |
GO:0031093 |
platelet alpha granule lumen |
The volume enclosed by the membrane of the platelet alpha granule. |
TAS |
MF |
GO:0005088 |
Ras guanyl-nucleotide exchange factor activity |
Stimulates the exchange of guanyl nucleotides associated with a GTPase of the Ras superfamily. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase. |
TAS |
MF |
GO:0005161 |
platelet-derived growth factor receptor binding |
Interacting selectively and non-covalently with the platelet-derived growth factor receptor. |
IDA|IPI |
MF |
GO:0005515 |
protein binding |
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
IPI |
MF |
GO:0005518 |
collagen binding |
Interacting selectively and non-covalently with collagen, a group of fibrous proteins of very high tensile strength that form the main component of connective tissue in animals. Collagen is highly enriched in glycine (some regions are 33% glycine) and proline, occurring predominantly as 3-hydroxyproline (about 20%). |
IDA |
MF |
GO:0008083 |
growth factor activity |
The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation. |
IDA |
MF |
GO:0042803 |
protein homodimerization activity |
Interacting selectively and non-covalently with an identical protein to form a homodimer. |
IDA |
MF |
GO:0046934 |
phosphatidylinositol-4,5-bisphosphate 3-kinase activity |
Catalysis of the reaction: 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate + ATP = a 1-phosphatidyl-1D-myo-inositol 3,4,5-trisphosphate + ADP + 2 H(+). |
TAS |
MF |
GO:0046982 |
protein heterodimerization activity |
Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer. |
IPI |
MF |
GO:0048407 |
platelet-derived growth factor binding |
Interacting selectively and non-covalently with platelet-derived growth factor. |
IPI |
Domain ID | Description |
---|---|
IPR000072 |
PDGF/VEGF domain |
IPR006782 |
Platelet-derived growth factor, N-terminal |
IPR023581 |
Platelet-derived growth factor, conserved site |
IPR029034 |
Cystine-knot cytokine |
Pathway ID | Pathway Term | Pathway Source |
---|---|---|
hsa01521 |
EGFR tyrosine kinase inhibitor resistance |
KEGG |
hsa04010 |
MAPK signaling pathway |
KEGG |
hsa04014 |
Ras signaling pathway |
KEGG |
hsa04015 |
Rap1 signaling pathway |
KEGG |
hsa04060 |
Cytokine-cytokine receptor interaction |
KEGG |
hsa04072 |
Phospholipase D signaling pathway |
KEGG |
hsa04151 |
PI3K-Akt signaling pathway |
KEGG |
hsa04510 |
Focal adhesion |
KEGG |
hsa04540 |
Gap junction |
KEGG |
hsa04810 |
Regulation of actin cytoskeleton |
KEGG |
hsa05166 |
HTLV-I infection |
KEGG |
hsa05200 |
Pathways in cancer |
KEGG |
hsa05202 |
Transcriptional misregulation in cancer |
KEGG |
hsa05206 |
MicroRNAs in cancer |
KEGG |
hsa05214 |
Glioma |
KEGG |
hsa05215 |
Prostate cancer |
KEGG |
hsa05218 |
Melanoma |
KEGG |
hsa05231 |
Choline metabolism in cancer |
KEGG |
hsa05418 |
Fluid shear stress and atherosclerosis |
KEGG |
WP306 |
Focal Adhesion |
WikiPathways |
WP2848 |
Differentiation Pathway |
WikiPathways |
WP3624 |
Lung fibrosis |
WikiPathways |
WP51 |
Regulation of Actin Cytoskeleton |
WikiPathways |
WP3931 |
ESC Pluripotency Pathways |
WikiPathways |
WP2526 |
PDGF Pathway |
WikiPathways |
WP530 |
Cytokines and Inflammatory Response |
WikiPathways |
WP3932 |
Focal Adhesion-PI3K-Akt-mTOR-signaling pathway |
WikiPathways |
h_inflamPathway |
Cytokines and Inflammatory Response |
BioCarta |
h_pparaPathway |
Mechanism of Gene Regulation by Peroxisome Proliferators via PPARa(alpha) |
BioCarta |
h_pdgfPathway |
PDGF Signaling Pathway |
BioCarta |
h_edg1Pathway |
Phospholipids as signalling intermediaries |
BioCarta |
UMLS CUI | UMLS Term |
---|---|
C0005942 |
Bone Diseases, Endocrine |
C0024115 |
Lung Diseases |
C0024667 |
Animal Mammary Neoplasms |
C0024668 |
Mammary Neoplasms, Experimental |
C0025500 |
Mesothelioma |
C0034069 |
Pulmonary Fibrosis |
C0040028 |
Thrombocythemia, Essential |
C0040136 |
Thyroid Neoplasm |
C1458155 |
Mammary Neoplasms |
Tissue | Cell Type |
---|---|
breast |
adipocytes |
breast |
glandular cells |
breast |
myoepithelial cells |
caudate |
neuronal cells |
cerebral cortex |
endothelial cells |
cervix, uterine |
glandular cells |
cervix, uterine |
squamous epithelial cells |
colon |
endothelial cells |
endometrium |
cells in endometrial stroma |
lung |
pneumocytes |
nasopharynx |
respiratory epithelial cells |
ovary |
follicle cells |
ovary |
ovarian stroma cells |
skin |
fibroblasts |
skin |
keratinocytes |
skin |
Langerhans |
skin |
melanocytes |
skin |
epidermal cells |
smooth muscle |
smooth muscle cells |
soft tissue |
adipocytes |
soft tissue |
fibroblasts |
thyroid gland |
glandular cells |
tonsil |
squamous epithelial cells |
vagina |
squamous epithelial cells |
Pubmed ID | Author | Year | Title |
---|---|---|---|
17148555 |
Wood et al. |
2007 |
Molecular Abnormalities in Oocytes from Women with Polycystic Ovary Syndrome Revealed by Microarray Analysis |
22951915 |
Haozi et al. |
2012 |
Altered gene expression profile in cumulus cells of mature MII oocytes from patients with polycystic ovary syndrome |
Gene Symbol | Entrez ID | Uniprot ID | Score |
---|---|---|---|
RASA1 |
5921 |
P20936 |
0.00 |
SOS1 |
6654 |
Q07889 |
0.00 |
A2M |
2 |
P01023 |
0.52 |
PDGFA |
5154 |
P04085 |
0.66 |
PLCG1 |
5335 |
P19174 |
0.72 |
HSPG2 |
3339 |
P98160 |
0.75 |
ERBB2 |
2064 |
P04626 |
0.00 |
FGFR1 |
2260 |
P11362 |
0.00 |
FGFR2 |
2263 |
P21802 |
0.00 |
FLT1 |
2321 |
P17948 |
0.00 |
FLT4 |
2324 |
P35916 |
0.00 |
IGF1R |
3480 |
P08069 |
0.00 |
KDR |
3791 |
P35968 |
0.00 |
MET |
4233 |
P08581 |
0.00 |
DUSP3 |
1845 |
P51452 |
0.52 |
FURIN |
5045 |
P09958 |
0.52 |
SPARC |
6678 |
P09486 |
0.52 |
COL1A1 |
1277 |
P02452 |
0.56 |
COL1A2 |
1278 |
P08123 |
0.56 |
COL2A1 |
1280 |
P02458 |
0.56 |
COL3A1 |
1281 |
P02461 |
0.56 |
COL4A1 |
1282 |
P02462 |
0.56 |
COL5A1 |
1289 |
P20908 |
0.56 |
COL6A1 |
1291 |
P12109 |
0.56 |
PDAP1 |
11333 |
Q13442 |
0.58 |
PDGFB |
5155 |
P01127 |
0.70 |
PDGFRB |
5159 |
P09619 |
0.72 |
PDGFRA |
5156 |
P16234 |
0.90 |