Gene Symbol | NFYB |
Entrez ID | 4801 |
Uniprot ID | P25208 |
Description | nuclear transcription factor Y subunit beta |
Chromosomal Location | chr12: 104,117,077-104,138,289 |
Ontology | GO ID | GO Term | Definition | Evidence |
---|---|---|---|---|
BP |
GO:0006351 |
transcription, DNA-templated |
The cellular synthesis of RNA on a template of DNA. |
IEA |
BP |
GO:0006355 |
regulation of transcription, DNA-templated |
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
IDA |
BP |
GO:0045893 |
positive regulation of transcription, DNA-templated |
Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription. |
IEA |
CC |
GO:0005634 |
nucleus |
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. |
IDA |
CC |
GO:0005654 |
nucleoplasm |
That part of the nuclear content other than the chromosomes or the nucleolus. |
TAS |
CC |
GO:0016602 |
CCAAT-binding factor complex |
A heteromeric transcription factor complex that binds to the CCAAT-box upstream of promoters; functions as both an activator and a repressor, depending on its interacting cofactors. Typically trimeric consisting of NFYA, NFYB and NFYC subunits. In Saccharomyces, it activates the transcription of genes in response to growth in a nonfermentable carbon source and consists of four known subunits: HAP2, HAP3, HAP4 and HAP5. |
IDA |
CC |
GO:0032993 |
protein-DNA complex |
A macromolecular complex containing both protein and DNA molecules. |
IDA |
MF |
GO:0003677 |
DNA binding |
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
IDA |
MF |
GO:0003700 |
transcription factor activity, sequence-specific DNA binding |
Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. |
IEA |
MF |
GO:0005515 |
protein binding |
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
IPI |
MF |
GO:0032403 |
protein complex binding |
Interacting selectively and non-covalently with any protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
IEA |
MF |
GO:0043565 |
sequence-specific DNA binding |
Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
IEA |
MF |
GO:0044212 |
transcription regulatory region DNA binding |
Interacting selectively and non-covalently with a DNA region that regulates the transcription of a region of DNA, which may be a gene, cistron, or operon. Binding may occur as a sequence specific interaction or as an interaction observed only once a factor has been recruited to the DNA by other factors. |
IDA |
MF |
GO:0046982 |
protein heterodimerization activity |
Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer. |
IEA |
MF |
GO:0070491 |
repressing transcription factor binding |
Interacting selectively and non-covalently with a transcription repressor, any protein whose activity is required to prevent or downregulate transcription. |
IPI |
Domain ID | Description |
---|---|
IPR003956 |
Transcription factor, NFYB/HAP3, conserved site |
IPR003958 |
Transcription factor CBF/NF-Y/archaeal histone domain |
IPR009072 |
Histone-fold |
Pathway ID | Pathway Term | Pathway Source |
---|---|---|
hsa04612 |
Antigen processing and presentation |
KEGG |
hsa05152 |
Tuberculosis |
KEGG |
hsa05166 |
HTLV-I infection |
KEGG |
h_tercPathway |
Overview of telomerase RNA component gene hTerc Transcriptional Regulation |
BioCarta |
Tissue | Cell Type |
---|---|
adrenal gland |
glandular cells |
appendix |
glandular cells |
appendix |
lymphoid tissue |
bone marrow |
hematopoietic cells |
breast |
adipocytes |
breast |
glandular cells |
breast |
myoepithelial cells |
bronchus |
respiratory epithelial cells |
caudate |
glial cells |
cerebellum |
cells in granular layer |
cerebellum |
cells in molecular layer |
cerebral cortex |
endothelial cells |
cerebral cortex |
glial cells |
cerebral cortex |
neuronal cells |
cervix, uterine |
glandular cells |
colon |
endothelial cells |
colon |
glandular cells |
colon |
peripheral nerve/ganglion |
duodenum |
glandular cells |
endometrium |
cells in endometrial stroma |
endometrium |
glandular cells |
epididymis |
glandular cells |
esophagus |
squamous epithelial cells |
fallopian tube |
glandular cells |
gallbladder |
glandular cells |
heart muscle |
myocytes |
hippocampus |
glial cells |
kidney |
cells in glomeruli |
kidney |
cells in tubules |
liver |
bile duct cells |
lung |
macrophages |
lung |
pneumocytes |
lymph node |
germinal center cells |
lymph node |
non-germinal center cells |
nasopharynx |
respiratory epithelial cells |
oral mucosa |
squamous epithelial cells |
ovary |
ovarian stroma cells |
pancreas |
exocrine glandular cells |
pancreas |
islets of Langerhans |
parathyroid gland |
glandular cells |
placenta |
trophoblastic cells |
prostate |
glandular cells |
rectum |
glandular cells |
salivary gland |
glandular cells |
seminal vesicle |
glandular cells |
skeletal muscle |
myocytes |
skin |
fibroblasts |
skin |
keratinocytes |
skin |
Langerhans |
skin |
melanocytes |
skin |
epidermal cells |
small intestine |
glandular cells |
smooth muscle |
smooth muscle cells |
soft tissue |
adipocytes |
soft tissue |
fibroblasts |
soft tissue |
peripheral nerve |
spleen |
cells in red pulp |
spleen |
cells in white pulp |
stomach |
glandular cells |
testis |
cells in seminiferous ducts |
testis |
Leydig cells |
thyroid gland |
glandular cells |
tonsil |
germinal center cells |
tonsil |
non-germinal center cells |
tonsil |
squamous epithelial cells |
urinary bladder |
urothelial cells |
vagina |
squamous epithelial cells |
Pubmed ID | Author | Year | Title |
---|---|---|---|
15598877 |
Wood et al. |
2005 |
Valproate-induced alterations in human theca cell gene expression: clues to the association between valproate use and metabolic side effects |
26459919 |
Lan et al. |
2015 |
Functional microarray analysis of differentially expressed genes in granulosa cells from women with polycystic ovary syndrome related to MAPK/ERK signaling |
Gene Symbol | Entrez ID | Uniprot ID | Score |
---|---|---|---|
LAGE3 |
8270 |
Q14657 |
0.49 |
CORO1B |
57175 |
Q9BR76 |
0.49 |
YBX1 |
4904 |
P67809 |
0.52 |
HDAC4 |
9759 |
P56524 |
0.52 |
C1QBP |
708 |
Q07021 |
0.55 |
TAF6 |
6878 |
P49848 |
0.56 |
TAF11 |
6882 |
Q15544 |
0.56 |
TAF12 |
6883 |
Q16514 |
0.56 |
CCNA2 |
890 |
P20248 |
0.63 |
CCNE1 |
898 |
P24864 |
0.63 |
GRB2 |
2885 |
P62993 |
0.63 |
HDAC1 |
3065 |
Q13547 |
0.63 |
MAOB |
4129 |
P27338 |
0.63 |
AGTRAP |
57085 |
Q6RW13 |
0.63 |
DRAP1 |
10589 |
Q14919 |
0.74 |
POLE4 |
56655 |
Q9NR33 |
0.82 |
EP300 |
2033 |
Q09472 |
0.83 |
NFYA |
4800 |
P23511 |
0.90 |
EIF4A1 |
1973 |
P60842 |
0.49 |
OSGEP |
55644 |
Q9NPF4 |
0.49 |
CIITA |
4261 |
P33076 |
0.52 |
ELF1 |
1997 |
P32519 |
0.62 |
YBX3 |
8531 |
P16989 |
0.62 |
CDK2 |
1017 |
P24941 |
0.63 |
CREBBP |
1387 |
Q92793 |
0.63 |
LYN |
4067 |
P07948 |
0.63 |
KAT2B |
8850 |
Q92831 |
0.63 |
SMYD3 |
64754 |
Q9H7B4 |
0.63 |
SP1 |
6667 |
P08047 |
0.77 |
CEBPZ |
10153 |
Q03701 |
0.78 |
MYC |
4609 |
P01106 |
0.79 |
CNTN2 |
6900 |
Q02246 |
0.79 |
TP53 |
7157 |
P04637 |
0.84 |
TP73 |
7161 |
O15350 |
0.84 |
TBP |
6908 |
P20226 |
0.88 |
NFYC |
4802 |
Q13952 |
0.96 |