Protein Description

Gene Symbol ARCN1
Entrez ID 372
Uniprot ID P48444
Description archain 1
Chromosomal Location chr11: 118,572,390-118,603,033
Ontology GO ID GO Term Definition Evidence

BP

GO:0006886

intracellular protein transport

The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.

TAS

BP

GO:0006888

ER to Golgi vesicle-mediated transport

The directed movement of substances from the endoplasmic reticulum (ER) to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi.

TAS

BP

GO:0006890

retrograde vesicle-mediated transport, Golgi to ER

The directed movement of substances from the Golgi back to the endoplasmic reticulum, mediated by vesicles bearing specific protein coats such as COPI or COG.

TAS

BP

GO:0008344

adult locomotory behavior

Locomotory behavior in a fully developed and mature organism.

IEA

BP

GO:0021691

cerebellar Purkinje cell layer maturation

A developmental process, independent of morphogenetic (shape) change, that is required for the cerebellar Purkinje cell layer to attain its fully functional state. The Purkinje cell layer lies just underneath the molecular layer of the cerebellar cortex. It contains the neuronal cell bodies of the Purkinje cells that are arranged side by side in a single layer. Candelabrum interneurons are vertically oriented between the Purkinje cells. Purkinje neurons are inhibitory and provide the output of the cerebellar cortex through axons that project into the white matter. Extensive dendritic trees from the Purkinje cells extend upward in a single plane into the molecular layer where they synapse with parallel fibers of granule cells.

IEA

BP

GO:0043473

pigmentation

The accumulation of pigment in an organism, tissue or cell, either by increased deposition or by increased number of cells.

IEA

CC

GO:0000139

Golgi membrane

The lipid bilayer surrounding any of the compartments of the Golgi apparatus.

TAS

CC

GO:0005737

cytoplasm

All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

IDA

CC

GO:0005789

endoplasmic reticulum membrane

The lipid bilayer surrounding the endoplasmic reticulum.

TAS

CC

GO:0005794

Golgi apparatus

A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions.

IDA

CC

GO:0005829

cytosol

The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.

TAS

CC

GO:0016020

membrane

A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

IDA

CC

GO:0030126

COPI vesicle coat

One of two multimeric complexes that forms a membrane vesicle coat. The mammalian COPI subunits are called alpha-, beta-, beta'-, gamma-, delta-, epsilon- and zeta-COP. Vesicles with COPI coats are found associated with Golgi membranes at steady state.

ISS

CC

GO:0030133

transport vesicle

Any of the vesicles of the constitutive secretory pathway, which carry cargo from the endoplasmic reticulum to the Golgi, between Golgi cisternae, from the Golgi to the ER (retrograde transport) or to destinations within or outside the cell.

TAS

CC

GO:0043231

intracellular membrane-bounded organelle

Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.

IDA

MF

GO:0044822

poly(A) RNA binding

Interacting non-covalently with a poly(A) RNA, a RNA molecule which has a tail of adenine bases.

IDA

Domain ID Description

IPR011012

Longin-like domain

IPR022775

AP complex, mu/sigma subunit

IPR027059

Coatomer delta subunit

IPR028565

Mu homology domain

Pathway ID Pathway Term Pathway Source

WP3596

miR-517 relationship with ARCN1 and USP1

WikiPathways

UMLS CUI UMLS Term

C0004134

Ataxia

Tissue Cell Type

appendix

glandular cells

bone marrow

hematopoietic cells

breast

glandular cells

bronchus

respiratory epithelial cells

cerebellum

Purkinje cells

cerebral cortex

glial cells

colon

glandular cells

colon

peripheral nerve/ganglion

duodenum

glandular cells

epididymis

glandular cells

esophagus

squamous epithelial cells

fallopian tube

glandular cells

gallbladder

glandular cells

lung

macrophages

lymph node

germinal center cells

lymph node

non-germinal center cells

nasopharynx

respiratory epithelial cells

pancreas

exocrine glandular cells

placenta

decidual cells

placenta

trophoblastic cells

rectum

glandular cells

salivary gland

glandular cells

seminal vesicle

glandular cells

skin

fibroblasts

skin

Langerhans

small intestine

glandular cells

soft tissue

chondrocytes

stomach

glandular cells

testis

cells in seminiferous ducts

thyroid gland

glandular cells

tonsil

germinal center cells

tonsil

non-germinal center cells

urinary bladder

urothelial cells

vagina

squamous epithelial cells

No databases found.

Pubmed ID Author Year Title

22951915

Haozi et al.

2012

Altered gene expression profile in cumulus cells of mature MII oocytes from patients with polycystic ovary syndrome

Gene Symbol Entrez ID Uniprot ID Score

SF3B1

23451

O75533

0.49

NOB1

28987

Q9ULX3

0.49

APP

351

P05067

0.56

COPE

11316

O14579

0.59

ARCN1

372

P48444

0.63

FLNB

2317

O75369

0.63

KLC1

3831

Q07866

0.63

PPP4R3A

55671

Q6IN85

0.63

COPZ1

22818

P61923

0.83

TMEM216

51259

Q9P0N5

0.49

TMEM17

200728

Q86X19

0.49

COPZ2

51226

Q9P299

0.59

CDC5L

988

Q99459

0.63

DDB2

1643

Q92466

0.63

DIAPH1

1729

O60610

0.63

ESR2

2100

Q92731

0.63

ITGA4

3676

P13612

0.63

JUN

3725

P05412

0.63

MCM2

4171

P49736

0.63

MYC

4609

P01106

0.63

NTRK1

4914

P04629

0.63

RNF2

6045

Q99496

0.63

TLE3

7090

Q04726

0.63

VCAM1

7412

P19320

0.63

XPO1

7514

O14980

0.63

TSC22D1

8848

Q15714

0.63

PTBP3

9991

O95758

0.63

SACM1L

22908

Q9NTJ5

0.63

SNW1

22938

Q13573

0.63

PHLDA3

23612

Q9Y5J5

0.63

TMED9

54732

Q9BVK6

0.63

OTUB1

55611

Q96FW1

0.63

CCDC8

83987

Q9H0W5

0.63

ATL3

25923

Q6DD88

0.72

NUDCD1

84955

Q96RS6

0.72

ARMC6

93436

Q6NXE6

0.72

CNTROB

116840

Q8N137

0.72

KEAP1

9817

Q14145

0.76

PAN2

9924

Q504Q3

0.76

TMED10

10972

P49755

0.78

COPG1

22820

Q9Y678

0.79

COPG2

26958

Q9UBF2

0.82

COPB2

9276

P35606

0.85

COPA

1314

P53621

0.87

COPB1

1315

P53618

0.99