pathway_id,pathway_term,pathway_source,proteins
h_DNAfragmentPathway,"Apoptotic DNA fragmentation and tissue homeostasis",BioCarta,DFFA;HMGB1;HMGB2;CEP104;TOP2A
h_pcafpathway,"The information-processing pathway at the IFN-beta enhancer",BioCarta,CREBBP;JUN;NFKB1;POLR2A;RELA;KAT2B;HMGB1;IRF1
hsa03410,"Base excision repair",KEGG,PARP2;POLD3;PARP1;FEN1;SMUG1;HMGB1;LIG1;MPG;MUTYH;NTHL1;PCNA;POLE3;POLD1;POLE;POLE2;NEIL3;POLE4;POLD4;TDG;UNG;MBD4
hsa04140,"Autophagy - animal",KEGG,AKT3;GABARAP;GABARAPL2;CTSB;CTSD;CTSL;DAPK1;DAPK3;EIF2S1;AKT1;AKT2;ERN1;RRAS2;GABARAPL1;WIPI2;NRBF2;PIK3R4;HIF1A;HMGB1;IGBP1;IGF1R;INS;IRS1;ITPR1;KRAS;LAMP1;LAMP2;EIF2AK4;NRAS;SH3GLB1;PIK3C3;PIK3CA;PIK3CB;PIK3CD;PIK3R1;ZFYVE1;DDIT4;WIPI1;ATG2B;PPP2CB;PRKAA2;PRKACA;PRKCD;PRKCQ;MAPK1;MAPK3;MAPK8;MAPK9;MAP2K1;MAP2K2;BAD;PTEN;TP53INP2;RRAGD;RAF1;BCL2;RHEB;RRAS;RRAGC;MLST8;DEPTOR;BNIP3;STK11;MAP3K7;TSC2;RAB7A;VMP1;ATG10;ULK1;IRS4;IRS2;CFLAR;ATG16L2;MTMR4;ATG12;SNAP29;ATG13;RB1CC1
WP2446,"Retinoblastoma (RB) in Cancer",WikiPathways,SMARCA2;E2F1;HMGB2;RAF1;HMGB1;TFDP1;FANCG;CDC7;TYMS;KIF4A;CDK1;RFC4;STMN1;RFC5;RBP1;MSH6;POLD3;RPA3;CDT1;BARD1;RBBP4;MAPK13;MDM2;RFC3;RB1;SKP2;DHFR;PRKDC;MYC;SMC1A;MIR21;CCDC6;RRM1;PRIM1;RRM2;CDKN1B;CDKN1A;DNMT1;SMC3;POLA1;ZNF655;TTK;PCNA;PLK4;POLE2;NPAT;MCM4;MCM3;MCM6;CCNA2;MCM7;SMC2;POLE;CDK2;CHEK1;CDK4;WEE1;TOP2A;H2AFZ;ANLN;TP53;E2F2;ORC1;CDK6;CDC25B;CCNE2;CCNB2;CDC25A;HDAC1;DCK;CCNB1;FAF1;CCND3
WP710,"DNA Damage Response (only ATM dependent)",WikiPathways,JUN;HMGB1;PDK1;BCL6;MAP3K4;MDM2;MAP3K7;WNT2B;AKT1;AKT2;PMAIP1;NRAS;AKT3;AXIN1;NFKB1;MYC;KRAS;LDLR;TGFB1;BBC3;BCL2L11;WNT5B;BCL2;FOXO3;APC;CCND2;CDC42;CCND3;SOS2;RHOA;BAD;PLAU;MAPK9;RAC2;ERBB2;SOD2;RAC3;PIK3R4;BAX;FOSL1;GRB2;SMAD3;SMAD4;INSR;RAC1;SOS1;TCF7L2;MAPK1;MAPK8;PCK2;GSK3B;SCP2;CDKN1B;CDKN1A;WNT2;WNT3;WNT5A;CTNNB1;WNT6;PIK3C3;PIK3C2A;PTEN;TCF7L1;TP53;PIK3CA;PIK3CB;PIK3CD;G6PC;PPP2R5C;IRS1;PIK3CG;PIK3R1;CCNG2